| Definition | Serratia proteamaculans 568 chromosome, complete genome. |
|---|---|
| Accession | NC_009832 |
| Length | 5,448,853 |
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The map label for this gene is yfeH [H]
Identifier: 157371679
GI number: 157371679
Start: 3812285
End: 3813277
Strand: Direct
Name: yfeH [H]
Synonym: Spro_3442
Alternate gene names: 157371679
Gene position: 3812285-3813277 (Clockwise)
Preceding gene: 157371675
Following gene: 157371683
Centisome position: 69.96
GC content: 57.6
Gene sequence:
>993_bases ATGAGATTTTTGCCCGATCGCTTTACCCTGACGCTAATCGCCACCGTGCTGCTGGCTTCGTTTCTGCCGGCACGCGGCGA GTTCGTCGGCTGGCTGAACGCGCTGACCATCGCCGCCATCGCCCTGCTGTTCTTTATGCACGGTGCCAAGCTGTCGCGCG AAGCCATTCTGGCCGGCAGCAATAACTGGCGGCTGCACCTGTGCGTGATGTTCAGCACCTTTATTATTTTCCCGACGCTT GGCGTGCTGTTTAAATGGTGGTCGCCGGTCAACGTCAGCCCTGAGCTGTATTCCGGCTTTATCTACCTGTGCATTCTGCC CGCCACCGTGCAGTCGGCCATCGCCTTTACTTCGCTGGCGGGCGGCAACGTGGCCGCTGCGGTGTGCAGCGCTTCGGCTT CAAGCCTGCTGGGGATTTTCGTCTCGCCACTGCTGGTGGGGCTGTTGATGAATGTGCACGGGGAAACCGGCAGCCTGCAA CAGGTAGGCTCCATCGTGCTGCAACTGCTGGTGCCGTTTGTCGCCGGTCATCTGTCACGACCGTTGATCGGCAAATGGAT TGAACGCAACCGCAAGCTGATCGGCAAGACCGACCAGACCTCAATTCTGCTGGTGGTGTATGCCGCCTTTAGCGAAGCGG TGACGCATGGCATCTGGCATCAGGTCGGCATCGGTTCGCTGATATTTATTGTGGTGGGCAGCCTGGTGCTTTTGACAATT GTGCTGGTGGTGAACACTTATATGGCTCGCTGGCTGGGCTTTAGCAAAGCCGACGAAATCACCATTGTGTTCTGCGGTTC GAAGAAAAGCCTGGCGAACGGTATCCCGATGGCCAATATCCTGTTTCCGGCCTCAACCGTGGGAATTATGGTGCTGCCGC TGATGGTGTTCCATCAGGTGCAACTGATGACCTGCGCGGTATTGGCACGACGCTATCAGAAAAAACAGCAGGAACAACAG GCGGCGCCCAACGTGGAAACCGCGCGAGGATAG
Upstream 100 bases:
>100_bases TTCATGTTTTTTATTCATATATGAATTAAATAAATCAATTTAATTATTATATCCGGTCGCGCGACAATGGGCGCATTGAT TTTTCTTCGAGTACGCCGCC
Downstream 100 bases:
>100_bases GAAAATGGGTGCGGCGGATACCGCACCCGGCAACTCAACTTTTCTTCAGCGGCTTGACCAGGTGGTCGAGCCCTTCAATT TTAATCGCCAACGTCATTTC
Product: bile acid:sodium symporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 330; Mature: 330
Protein sequence:
>330_residues MRFLPDRFTLTLIATVLLASFLPARGEFVGWLNALTIAAIALLFFMHGAKLSREAILAGSNNWRLHLCVMFSTFIIFPTL GVLFKWWSPVNVSPELYSGFIYLCILPATVQSAIAFTSLAGGNVAAAVCSASASSLLGIFVSPLLVGLLMNVHGETGSLQ QVGSIVLQLLVPFVAGHLSRPLIGKWIERNRKLIGKTDQTSILLVVYAAFSEAVTHGIWHQVGIGSLIFIVVGSLVLLTI VLVVNTYMARWLGFSKADEITIVFCGSKKSLANGIPMANILFPASTVGIMVLPLMVFHQVQLMTCAVLARRYQKKQQEQQ AAPNVETARG
Sequences:
>Translated_330_residues MRFLPDRFTLTLIATVLLASFLPARGEFVGWLNALTIAAIALLFFMHGAKLSREAILAGSNNWRLHLCVMFSTFIIFPTL GVLFKWWSPVNVSPELYSGFIYLCILPATVQSAIAFTSLAGGNVAAAVCSASASSLLGIFVSPLLVGLLMNVHGETGSLQ QVGSIVLQLLVPFVAGHLSRPLIGKWIERNRKLIGKTDQTSILLVVYAAFSEAVTHGIWHQVGIGSLIFIVVGSLVLLTI VLVVNTYMARWLGFSKADEITIVFCGSKKSLANGIPMANILFPASTVGIMVLPLMVFHQVQLMTCAVLARRYQKKQQEQQ AAPNVETARG >Mature_330_residues MRFLPDRFTLTLIATVLLASFLPARGEFVGWLNALTIAAIALLFFMHGAKLSREAILAGSNNWRLHLCVMFSTFIIFPTL GVLFKWWSPVNVSPELYSGFIYLCILPATVQSAIAFTSLAGGNVAAAVCSASASSLLGIFVSPLLVGLLMNVHGETGSLQ QVGSIVLQLLVPFVAGHLSRPLIGKWIERNRKLIGKTDQTSILLVVYAAFSEAVTHGIWHQVGIGSLIFIVVGSLVLLTI VLVVNTYMARWLGFSKADEITIVFCGSKKSLANGIPMANILFPASTVGIMVLPLMVFHQVQLMTCAVLARRYQKKQQEQQ AAPNVETARG
Specific function: Unknown
COG id: COG0385
COG function: function code R; Predicted Na+-dependent transporter
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI71725371, Length=289, Percent_Identity=27.3356401384083, Blast_Score=108, Evalue=9e-24, Organism=Escherichia coli, GI1788749, Length=316, Percent_Identity=77.5316455696203, Blast_Score=471, Evalue=1e-134, Organism=Saccharomyces cerevisiae, GI6323677, Length=377, Percent_Identity=22.0159151193634, Blast_Score=74, Evalue=2e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016833 [H]
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35772; Mature: 35772
Theoretical pI: Translated: 10.09; Mature: 10.09
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRFLPDRFTLTLIATVLLASFLPARGEFVGWLNALTIAAIALLFFMHGAKLSREAILAGS CCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHEEECC NNWRLHLCVMFSTFIIFPTLGVLFKWWSPVNVSPELYSGFIYLCILPATVQSAIAFTSLA CCCEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCHHHHHHHHHHHHHHHHHHHCC GGNVAAAVCSASASSLLGIFVSPLLVGLLMNVHGETGSLQQVGSIVLQLLVPFVAGHLSR CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCC PLIGKWIERNRKLIGKTDQTSILLVVYAAFSEAVTHGIWHQVGIGSLIFIVVGSLVLLTI HHHHHHHHHCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VLVVNTYMARWLGFSKADEITIVFCGSKKSLANGIPMANILFPASTVGIMVLPLMVFHQV HHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHH QLMTCAVLARRYQKKQQEQQAAPNVETARG HHHHHHHHHHHHHHHHHHHHCCCCCCCCCC >Mature Secondary Structure MRFLPDRFTLTLIATVLLASFLPARGEFVGWLNALTIAAIALLFFMHGAKLSREAILAGS CCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHEEECC NNWRLHLCVMFSTFIIFPTLGVLFKWWSPVNVSPELYSGFIYLCILPATVQSAIAFTSLA CCCEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCHHHHHHHHHHHHHHHHHHHCC GGNVAAAVCSASASSLLGIFVSPLLVGLLMNVHGETGSLQQVGSIVLQLLVPFVAGHLSR CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCC PLIGKWIERNRKLIGKTDQTSILLVVYAAFSEAVTHGIWHQVGIGSLIFIVVGSLVLLTI HHHHHHHHHCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VLVVNTYMARWLGFSKADEITIVFCGSKKSLANGIPMANILFPASTVGIMVLPLMVFHQV HHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHH QLMTCAVLARRYQKKQQEQQAAPNVETARG HHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9205837; 9278503; 7984428 [H]