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The map label for this gene is ddpA [H]

Identifier: 157371151

GI number: 157371151

Start: 3203978

End: 3205552

Strand: Reverse

Name: ddpA [H]

Synonym: Spro_2911

Alternate gene names: 157371151

Gene position: 3205552-3203978 (Counterclockwise)

Preceding gene: 157371152

Following gene: 157371150

Centisome position: 58.83

GC content: 58.48

Gene sequence:

>1575_bases
ATGAAACGGTTAATCCCCACCTTATTGTTCAGCGCCCTGGCGGCGAGCTTTGGCGCACAGGCGGCGACCCCGAAAGACCA
GCTAGTAGTGGTCAGTTCGCTGGAAGGCATCATCAGCCTGGATCCGGCGGAAAGTTTCGAAACCGTCAGCTCGGCCAACC
TGGTCAATCTGTATCAGCGGTTGCTCACGCCGGACCGTACCACGCCGGAAAAACTGGCGCCGGAGTTGGCCAGCGGTTGG
CAGGCGGGGGCAGACGGTCGCAGCCTGATTTTTACCCTGAAGGCAAACCAGCGTTTTGCTTCCGGTAATCCAGTGCGGCC
GGAGGATGTGATCTTCTCCCTGGTAAGAGCGGTGAAACTGAACAAGGCGCCGTCGTTCATTCTCGGCGAATTTGGCTGGA
CGCCGGAAAACGTCGAGAGTCAGTTGAAGAAGCTGGGCGATAACCAGGTGCAGTTAAGCTGGTCGGCCAATATCGGTAGT
GGGCTGGCATTGCGGCTATTGACCGCGCCGGTCGCCTCGATCGTCGATGAGAAACTGTTGAGTGAGCACAGCCAACAGGG
AGATTTCGGCAACGCCTGGCTGCGTTCCAATTCCGCCGGTGCAGGCCCTTATCGCGTCAGTAACTATGTGCCGCATGAGG
CACTGTTATTCAGTCGGAACGACTACGCTCAACCGCAGGCGAAGATAAAAACGGTGCTGCTGAAGAACGTCAGCGATGCC
GGAACCCGGCGCCTGTTGCTGCTGAAAGGAGACGCCGACGTGGCTTACGATCTGGGTGCCGATCAGTTCAATTCGTTGCG
TAAAGAGCCGGGGGTCAGGATAGAGCAGCAGGACTCGTCCAAAGTCTATTATCTCGGCTTCAACACCGGCAGCAAACAGA
CGCCGGCGTTGAGCAACCCAGCCCTGTGGCAGGCGGCGCGCTGGCTGGTGGACTATCAATCCATTGCCGACAACCTGTTG
AAGGGGCAGTACCGTGTTCACCAGGCGTTTCTGCCGCTGGGGCTGGATGGCGCGATCGACGACCAACCGTTCAAGCTCGA
CGTAGCCAGGGCCAAACAGATTTTGCATGACGCCGGGATTGCCGAAGGTACGCGCATTGATCTGATCGTCATCAACCAGC
CGCCGTATACCGATATTGCCCAGGTGCTGCAGGCCAGCTTTGCCAAGGCCGGTTTGCAACTGGATATCCATCCGGTGGTG
GAAAGCGATCTGTGGGGCAAGATGCGCAGTCGTGATTTCCAGGCCATTTTCACCTATTGGGGGGCCGACTATCTGGACCC
GAACACTAACGCCAGCGCCTTTGCTTACAATGTGCCCGGCGGGCCGAAAACCCTGGCATGGCGTACCCAGTGGAACATCC
CGGCGCTGAGTGCGGAAACCCGCGCAGCGGCGGCGGAAGGTGACGGGGCAAAACGCGCCGCGCACTACGCCAGCTTGCAG
CGTGAATTACAGACCAGCTCACCTTACGTGGTGGCATTGCAGGGGCAAACGCTGGTGGCGCTGCGCGACAACGTTAAAAA
CGCCAAAGTGGATATCGCCAACAGCATGCTGTATCTGGATCGCGTGAGTAAGTAA

Upstream 100 bases:

>100_bases
CTGCGTAATAAATAAAGCAATTTATAGTCGTTCTTCATCTAAGCCACTGCCCCTACACTCGAAAAATAACGCATCCGCGT
AATTCTGGAGAGTGCATCTA

Downstream 100 bases:

>100_bases
CCCGCCACGGCACGGCTTTTGCAGGATCGGTTTATTTAGCGAATCGGGGATCCTGTCATGAGCCGCAATCACGTTTTCCC
ACCCAGCGCCGGCGACTTTT

Product: extracellular solute-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 524; Mature: 524

Protein sequence:

>524_residues
MKRLIPTLLFSALAASFGAQAATPKDQLVVVSSLEGIISLDPAESFETVSSANLVNLYQRLLTPDRTTPEKLAPELASGW
QAGADGRSLIFTLKANQRFASGNPVRPEDVIFSLVRAVKLNKAPSFILGEFGWTPENVESQLKKLGDNQVQLSWSANIGS
GLALRLLTAPVASIVDEKLLSEHSQQGDFGNAWLRSNSAGAGPYRVSNYVPHEALLFSRNDYAQPQAKIKTVLLKNVSDA
GTRRLLLLKGDADVAYDLGADQFNSLRKEPGVRIEQQDSSKVYYLGFNTGSKQTPALSNPALWQAARWLVDYQSIADNLL
KGQYRVHQAFLPLGLDGAIDDQPFKLDVARAKQILHDAGIAEGTRIDLIVINQPPYTDIAQVLQASFAKAGLQLDIHPVV
ESDLWGKMRSRDFQAIFTYWGADYLDPNTNASAFAYNVPGGPKTLAWRTQWNIPALSAETRAAAAEGDGAKRAAHYASLQ
RELQTSSPYVVALQGQTLVALRDNVKNAKVDIANSMLYLDRVSK

Sequences:

>Translated_524_residues
MKRLIPTLLFSALAASFGAQAATPKDQLVVVSSLEGIISLDPAESFETVSSANLVNLYQRLLTPDRTTPEKLAPELASGW
QAGADGRSLIFTLKANQRFASGNPVRPEDVIFSLVRAVKLNKAPSFILGEFGWTPENVESQLKKLGDNQVQLSWSANIGS
GLALRLLTAPVASIVDEKLLSEHSQQGDFGNAWLRSNSAGAGPYRVSNYVPHEALLFSRNDYAQPQAKIKTVLLKNVSDA
GTRRLLLLKGDADVAYDLGADQFNSLRKEPGVRIEQQDSSKVYYLGFNTGSKQTPALSNPALWQAARWLVDYQSIADNLL
KGQYRVHQAFLPLGLDGAIDDQPFKLDVARAKQILHDAGIAEGTRIDLIVINQPPYTDIAQVLQASFAKAGLQLDIHPVV
ESDLWGKMRSRDFQAIFTYWGADYLDPNTNASAFAYNVPGGPKTLAWRTQWNIPALSAETRAAAAEGDGAKRAAHYASLQ
RELQTSSPYVVALQGQTLVALRDNVKNAKVDIANSMLYLDRVSK
>Mature_524_residues
MKRLIPTLLFSALAASFGAQAATPKDQLVVVSSLEGIISLDPAESFETVSSANLVNLYQRLLTPDRTTPEKLAPELASGW
QAGADGRSLIFTLKANQRFASGNPVRPEDVIFSLVRAVKLNKAPSFILGEFGWTPENVESQLKKLGDNQVQLSWSANIGS
GLALRLLTAPVASIVDEKLLSEHSQQGDFGNAWLRSNSAGAGPYRVSNYVPHEALLFSRNDYAQPQAKIKTVLLKNVSDA
GTRRLLLLKGDADVAYDLGADQFNSLRKEPGVRIEQQDSSKVYYLGFNTGSKQTPALSNPALWQAARWLVDYQSIADNLL
KGQYRVHQAFLPLGLDGAIDDQPFKLDVARAKQILHDAGIAEGTRIDLIVINQPPYTDIAQVLQASFAKAGLQLDIHPVV
ESDLWGKMRSRDFQAIFTYWGADYLDPNTNASAFAYNVPGGPKTLAWRTQWNIPALSAETRAAAAEGDGAKRAAHYASLQ
RELQTSSPYVVALQGQTLVALRDNVKNAKVDIANSMLYLDRVSK

Specific function: Part of the ABC transporter complex ddpABCDF, which is probably involved in D,D-dipeptide transport [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1787762, Length=516, Percent_Identity=27.1317829457364, Blast_Score=145, Evalue=6e-36,
Organism=Escherichia coli, GI1789966, Length=484, Percent_Identity=24.3801652892562, Blast_Score=97, Evalue=3e-21,
Organism=Escherichia coli, GI1787551, Length=293, Percent_Identity=26.962457337884, Blast_Score=72, Evalue=6e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 57189; Mature: 57189

Theoretical pI: Translated: 8.55; Mature: 8.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
0.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRLIPTLLFSALAASFGAQAATPKDQLVVVSSLEGIISLDPAESFETVSSANLVNLYQR
CCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCEEECCCHHHHHHHHCHHHHHHHHH
LLTPDRTTPEKLAPELASGWQAGADGRSLIFTLKANQRFASGNPVRPEDVIFSLVRAVKL
HHCCCCCCHHHHHHHHHCCCCCCCCCCEEEEEEECCCEECCCCCCCHHHHHHHHHHHHHC
NKAPSFILGEFGWTPENVESQLKKLGDNQVQLSWSANIGSGLALRLLTAPVASIVDEKLL
CCCCCEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHH
SEHSQQGDFGNAWLRSNSAGAGPYRVSNYVPHEALLFSRNDYAQPQAKIKTVLLKNVSDA
HHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCHHEEECCCCCCCHHHHHHHHHHHCCCCC
GTRRLLLLKGDADVAYDLGADQFNSLRKEPGVRIEQQDSSKVYYLGFNTGSKQTPALSNP
CCEEEEEEECCCCEEEECCCHHHHHHHHCCCCEEEECCCCEEEEEEECCCCCCCCCCCCC
ALWQAARWLVDYQSIADNLLKGQYRVHQAFLPLGLDGAIDDQPFKLDVARAKQILHDAGI
HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCCCCCCCCCCEEEHHHHHHHHHHCCC
AEGTRIDLIVINQPPYTDIAQVLQASFAKAGLQLDIHPVVESDLWGKMRSRDFQAIFTYW
CCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCEEEEHHHHCHHHHHHHHCCCHHHHHHHH
GADYLDPNTNASAFAYNVPGGPKTLAWRTQWNIPALSAETRAAAAEGDGAKRAAHYASLQ
CCCCCCCCCCCCEEEEECCCCCCEEEEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHH
RELQTSSPYVVALQGQTLVALRDNVKNAKVDIANSMLYLDRVSK
HHHHCCCCEEEEECCCEEEEECCCCCCCEEEHHHHEEEHHHCCC
>Mature Secondary Structure
MKRLIPTLLFSALAASFGAQAATPKDQLVVVSSLEGIISLDPAESFETVSSANLVNLYQR
CCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCEEECCCHHHHHHHHCHHHHHHHHH
LLTPDRTTPEKLAPELASGWQAGADGRSLIFTLKANQRFASGNPVRPEDVIFSLVRAVKL
HHCCCCCCHHHHHHHHHCCCCCCCCCCEEEEEEECCCEECCCCCCCHHHHHHHHHHHHHC
NKAPSFILGEFGWTPENVESQLKKLGDNQVQLSWSANIGSGLALRLLTAPVASIVDEKLL
CCCCCEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHH
SEHSQQGDFGNAWLRSNSAGAGPYRVSNYVPHEALLFSRNDYAQPQAKIKTVLLKNVSDA
HHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCHHEEECCCCCCCHHHHHHHHHHHCCCCC
GTRRLLLLKGDADVAYDLGADQFNSLRKEPGVRIEQQDSSKVYYLGFNTGSKQTPALSNP
CCEEEEEEECCCCEEEECCCHHHHHHHHCCCCEEEECCCCEEEEEEECCCCCCCCCCCCC
ALWQAARWLVDYQSIADNLLKGQYRVHQAFLPLGLDGAIDDQPFKLDVARAKQILHDAGI
HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCCCCCCCCCCEEEHHHHHHHHHHCCC
AEGTRIDLIVINQPPYTDIAQVLQASFAKAGLQLDIHPVVESDLWGKMRSRDFQAIFTYW
CCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCEEEEHHHHCHHHHHHHHCCCHHHHHHHH
GADYLDPNTNASAFAYNVPGGPKTLAWRTQWNIPALSAETRAAAAEGDGAKRAAHYASLQ
CCCCCCCCCCCCEEEEECCCCCCEEEEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHH
RELQTSSPYVVALQGQTLVALRDNVKNAKVDIANSMLYLDRVSK
HHHHCCCCEEEEECCCEEEEECCCCCCCEEEHHHHEEEHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9751644 [H]