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The map label for this gene is pqrA [H]

Identifier: 157371073

GI number: 157371073

Start: 3110111

End: 3110497

Strand: Direct

Name: pqrA [H]

Synonym: Spro_2833

Alternate gene names: 157371073

Gene position: 3110111-3110497 (Clockwise)

Preceding gene: 157371072

Following gene: 157371077

Centisome position: 57.08

GC content: 50.13

Gene sequence:

>387_bases
ATGATACAAGAACACCACCTCTCATTGGTCTGCGCCCTCAGTAAATGGGTCGAAACTCACCTTGGAAGAGTGATCCATCT
TGAAGAGCTGGCCGAATACTCCGGCTACTCTCTGTGGCACATGCAGAAGTTGTTCAAAGAAGCGACCGGGATTTCGCTGG
GCAAGTACATCCGCGAACGCAGGCTGGCCGGTGCGGTTTACCAGTTGCGAAGCAGTGACGCCTCTATTTTCGACATCGCC
CTCGATTTTGGTTTCGGCTCACAGTCACACTTTACTTATATGTTCAGAAAGCGCTTCGATATCACGCCTTATGATTTTCG
TCAGGATTTAAGCGTGGATCTGCATATTGCTCCACCGCTGCACGTCATTCATCAAAAGACCGCCTGA

Upstream 100 bases:

>100_bases
GTTTTTCCGAATAATTTCACCCGGGTGTCGGTGGCTTTTTTGTCCATGGCGGCAAGTTGTGTATACTTCAGCGCTATGTA
GATCTCACACAGACGCACTG

Downstream 100 bases:

>100_bases
CCGACTTTCCCGCCGCCGCTAGCGGCGGGTTAATGCGTCCACAGTACCGCCACCAGGCCAATCAACGCGGGCAACGCCTG
TACCCTGAGAATTTTACGGC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 128; Mature: 128

Protein sequence:

>128_residues
MIQEHHLSLVCALSKWVETHLGRVIHLEELAEYSGYSLWHMQKLFKEATGISLGKYIRERRLAGAVYQLRSSDASIFDIA
LDFGFGSQSHFTYMFRKRFDITPYDFRQDLSVDLHIAPPLHVIHQKTA

Sequences:

>Translated_128_residues
MIQEHHLSLVCALSKWVETHLGRVIHLEELAEYSGYSLWHMQKLFKEATGISLGKYIRERRLAGAVYQLRSSDASIFDIA
LDFGFGSQSHFTYMFRKRFDITPYDFRQDLSVDLHIAPPLHVIHQKTA
>Mature_128_residues
MIQEHHLSLVCALSKWVETHLGRVIHLEELAEYSGYSLWHMQKLFKEATGISLGKYIRERRLAGAVYQLRSSDASIFDIA
LDFGFGSQSHFTYMFRKRFDITPYDFRQDLSVDLHIAPPLHVIHQKTA

Specific function: Regulatory factor of blood coagulation [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790497, Length=105, Percent_Identity=40.9523809523809, Blast_Score=100, Evalue=5e-23,
Organism=Escherichia coli, GI1790857, Length=108, Percent_Identity=41.6666666666667, Blast_Score=89, Evalue=8e-20,
Organism=Escherichia coli, GI87081928, Length=92, Percent_Identity=41.304347826087, Blast_Score=88, Evalue=2e-19,
Organism=Escherichia coli, GI1790339, Length=105, Percent_Identity=33.3333333333333, Blast_Score=69, Evalue=8e-14,

Paralogues:

None

Copy number: 2500 (L-broth) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 14879; Mature: 14879

Theoretical pI: Translated: 7.86; Mature: 7.86

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIQEHHLSLVCALSKWVETHLGRVIHLEELAEYSGYSLWHMQKLFKEATGISLGKYIRER
CCCHHHHHHHHHHHHHHHHHHCCEEEHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHH
RLAGAVYQLRSSDASIFDIALDFGFGSQSHFTYMFRKRFDITPYDFRQDLSVDLHIAPPL
HHHHHHHHHHCCCCEEEEEEEECCCCCCCHHHHEEHHHCCCCCCCCCCCCEEEEEECCCH
HVIHQKTA
HHHCCCCC
>Mature Secondary Structure
MIQEHHLSLVCALSKWVETHLGRVIHLEELAEYSGYSLWHMQKLFKEATGISLGKYIRER
CCCHHHHHHHHHHHHHHHHHHCCEEEHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHH
RLAGAVYQLRSSDASIFDIALDFGFGSQSHFTYMFRKRFDITPYDFRQDLSVDLHIAPPL
HHHHHHHHHHCCCCEEEEEEEECCCCCCCHHHHEEHHHCCCCCCCCCCCCEEEEEECCCH
HVIHQKTA
HHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7726514 [H]