| Definition | Serratia proteamaculans 568 chromosome, complete genome. |
|---|---|
| Accession | NC_009832 |
| Length | 5,448,853 |
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The map label for this gene is 157370784
Identifier: 157370784
GI number: 157370784
Start: 2799847
End: 2800902
Strand: Reverse
Name: 157370784
Synonym: Spro_2544
Alternate gene names: NA
Gene position: 2800902-2799847 (Counterclockwise)
Preceding gene: 157370786
Following gene: 157370783
Centisome position: 51.4
GC content: 57.77
Gene sequence:
>1056_bases ATGAAAACCTTGAAAGGTCCAAGCCTGCATCTGGCACAGTTCAGTGACGATGCCGCCCCCTTTAACAGCCTGCCGGCTAT CGCCCAGTGGGCGGCGCAAACCGGCTTTAAAGCTTTGCAAATTCCGGCATGGGATAGTCGCCTGTTTGATTTGGCCACCG CCGCAGAAAGCCAAACCTATTGTGATGAGCTGGTCGGCATGTTGGCAGACCATGGCCTGGTGGTCAGTGAACTCACTACC CATATTTTTGGCCAGTTGATGGCAGTGCATCCGGCCTATGACGCATTGTGCGACAGTTTTGCGCCAGCGGAACTGCATGG CAACCCGCAGGCGCGCGGTGAATGGGCGCACCGGCAGTTGCTGTTGGCGGCCAAAGCCTCTGCGCGGTTGGGACTCAGTG AGATGGGCACCTTCTCCGGTTCCCTGGCCTGGCCGTATTTGTTCCCGTTCCCGCAGCGTCCGGCGGGGCTGATCGAAACG GCGTTCGATGAACTGGCCAAACGCTGGTTGCCGGTGCTCAACGCCTGCGACGAGCAGGGAGTGAACCTGTGTTATGAAAT TCACCCGAGCGAAGATCTGCACGACGGCGTGACCTTTGAAATGTTTCATCAGCGCGTTGGGGCACATCCGCGTTGCCAGA TCCTGTTCGACCCGAGTCACTTCGTGCTGCAACAGTTGAACTATCTGGATTACATCGATATTTACAAGGACTTTATCCGC ATGTTCCACGTCAAGGACGCCGAGTTCAACCCGACCGGACGGCAGGGCATTTACGGCGGCTATCAGTCATGGACCGACCG TGCCGGACGTTTCCGCTCATTGGGTGACGGCCAGGTGGATTTCAAAGGCATTTTCTCGCGGCTGACCCAGCATGGCTACG CCGGTTGGGCGACGCTGGAGTGGGAATGCTGCCTGAAACACCCGCAGGATGGCGCACGCGAAGGCGCGGCCTTTATTCGT GACCACATCATCAACGTCACCGACAAGGTGTTTGATGACTTTGCCGGCGCGCCGGTTGACCAACAGCAAATCAATACCTT GCTTGGCCTGCGCTGA
Upstream 100 bases:
>100_bases GCTTAAATCCACTGTAATACCAACGATTTTTTAAAATTCGCTTGCTGAAGGATTCATTTAAGCCTATTGTTTGTCAATCG ACAACCAATTGGAGTTTAGA
Downstream 100 bases:
>100_bases GCCACACAATTCCACCACGGAGAACACCGATGACACTGCAAAATAACGGGTCCATGTTGAATGGACCTGAACCAGAACAC GTCTATACGCGGGTAAACGG
Product: xylose isomerase domain-containing protein
Products: NA
Alternate protein names: Xylose Isomerase Domain Protein TIM Barrel; Sugar Phosphate Isomerase/Epimerase; Xylose Isomerase-Like TIM Barrel; Xylose Isomerase-Like Protein; Xylose Isomerase Domain-Containing Protein TIM Barrel; Xylose Isomerase Domain Protein Tim Barrel; Iole Protein; AP Endonuclease; Endonuclease IV; Apurinic/Apyrimidinic Endonuclease; Endonuclease; Xylose Isomerase DomaiN-Containing Protein Tim Barrel; Inosose Dehydratase; IolE-Like Protein; IolE Protein; Xylose Isomerase-Like; Xylose Isomerase-Like TIM Barrel Family Protein; AP Endonuclease Family 2 C Terminus Family; Xylose Isomerase/Endonuclease Family Protein; Sugar Phosphate Isomerase/Epimerase IolE; Xlose Isomerase Domain-Containing Protein
Number of amino acids: Translated: 351; Mature: 351
Protein sequence:
>351_residues MKTLKGPSLHLAQFSDDAAPFNSLPAIAQWAAQTGFKALQIPAWDSRLFDLATAAESQTYCDELVGMLADHGLVVSELTT HIFGQLMAVHPAYDALCDSFAPAELHGNPQARGEWAHRQLLLAAKASARLGLSEMGTFSGSLAWPYLFPFPQRPAGLIET AFDELAKRWLPVLNACDEQGVNLCYEIHPSEDLHDGVTFEMFHQRVGAHPRCQILFDPSHFVLQQLNYLDYIDIYKDFIR MFHVKDAEFNPTGRQGIYGGYQSWTDRAGRFRSLGDGQVDFKGIFSRLTQHGYAGWATLEWECCLKHPQDGAREGAAFIR DHIINVTDKVFDDFAGAPVDQQQINTLLGLR
Sequences:
>Translated_351_residues MKTLKGPSLHLAQFSDDAAPFNSLPAIAQWAAQTGFKALQIPAWDSRLFDLATAAESQTYCDELVGMLADHGLVVSELTT HIFGQLMAVHPAYDALCDSFAPAELHGNPQARGEWAHRQLLLAAKASARLGLSEMGTFSGSLAWPYLFPFPQRPAGLIET AFDELAKRWLPVLNACDEQGVNLCYEIHPSEDLHDGVTFEMFHQRVGAHPRCQILFDPSHFVLQQLNYLDYIDIYKDFIR MFHVKDAEFNPTGRQGIYGGYQSWTDRAGRFRSLGDGQVDFKGIFSRLTQHGYAGWATLEWECCLKHPQDGAREGAAFIR DHIINVTDKVFDDFAGAPVDQQQINTLLGLR >Mature_351_residues MKTLKGPSLHLAQFSDDAAPFNSLPAIAQWAAQTGFKALQIPAWDSRLFDLATAAESQTYCDELVGMLADHGLVVSELTT HIFGQLMAVHPAYDALCDSFAPAELHGNPQARGEWAHRQLLLAAKASARLGLSEMGTFSGSLAWPYLFPFPQRPAGLIET AFDELAKRWLPVLNACDEQGVNLCYEIHPSEDLHDGVTFEMFHQRVGAHPRCQILFDPSHFVLQQLNYLDYIDIYKDFIR MFHVKDAEFNPTGRQGIYGGYQSWTDRAGRFRSLGDGQVDFKGIFSRLTQHGYAGWATLEWECCLKHPQDGAREGAAFIR DHIINVTDKVFDDFAGAPVDQQQINTLLGLR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39231; Mature: 39231
Theoretical pI: Translated: 5.48; Mature: 5.48
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKTLKGPSLHLAQFSDDAAPFNSLPAIAQWAAQTGFKALQIPAWDSRLFDLATAAESQTY CCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHHHH CDELVGMLADHGLVVSELTTHIFGQLMAVHPAYDALCDSFAPAELHGNPQARGEWAHRQL HHHHHHHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCHHCCCCCCCCCHHHHHHH LLAAKASARLGLSEMGTFSGSLAWPYLFPFPQRPAGLIETAFDELAKRWLPVLNACDEQG HHHHHHHHHCCHHHHCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC VNLCYEIHPSEDLHDGVTFEMFHQRVGAHPRCQILFDPSHFVLQQLNYLDYIDIYKDFIR CCEEEEECCCCCCCCCCHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHH MFHVKDAEFNPTGRQGIYGGYQSWTDRAGRFRSLGDGQVDFKGIFSRLTQHGYAGWATLE HHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCEEEEE WECCLKHPQDGAREGAAFIRDHIINVTDKVFDDFAGAPVDQQQINTLLGLR HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCC >Mature Secondary Structure MKTLKGPSLHLAQFSDDAAPFNSLPAIAQWAAQTGFKALQIPAWDSRLFDLATAAESQTY CCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHHHH CDELVGMLADHGLVVSELTTHIFGQLMAVHPAYDALCDSFAPAELHGNPQARGEWAHRQL HHHHHHHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCHHCCCCCCCCCHHHHHHH LLAAKASARLGLSEMGTFSGSLAWPYLFPFPQRPAGLIETAFDELAKRWLPVLNACDEQG HHHHHHHHHCCHHHHCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC VNLCYEIHPSEDLHDGVTFEMFHQRVGAHPRCQILFDPSHFVLQQLNYLDYIDIYKDFIR CCEEEEECCCCCCCCCCHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHH MFHVKDAEFNPTGRQGIYGGYQSWTDRAGRFRSLGDGQVDFKGIFSRLTQHGYAGWATLE HHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCEEEEE WECCLKHPQDGAREGAAFIRDHIINVTDKVFDDFAGAPVDQQQINTLLGLR HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA