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The map label for this gene is pecT [H]

Identifier: 157370594

GI number: 157370594

Start: 2566924

End: 2567790

Strand: Direct

Name: pecT [H]

Synonym: Spro_2354

Alternate gene names: 157370594

Gene position: 2566924-2567790 (Clockwise)

Preceding gene: 157370591

Following gene: 157370596

Centisome position: 47.11

GC content: 58.94

Gene sequence:

>867_bases
ATGAACATTGACCCGACACTGCTGCGCACCTTCGTTGCGGTTACCGAAACCGGCGGCTTTACGCGCGCTGCGCAGCTACA
GAATCTGACCCAATCCGCGATCAGTCACCAGATCCGTCGGCTTGAGGAGCAGATTGGCCGACAGTTATTGCACCGTACTA
CGCGCCGCCTGACGCTAACCGAAGACGGTGAGGATTTGCTACGCCACGCCATGCAAGTTTTGCATGCGCTCGACGCCATG
CGGCGGCGCTTTGAATCCTCACCCGTGTCGGGAGTAGTACGCTTTGGCCTTACGGAGAGTTTTCTGGGGGAACGATTGCC
GCCGTTGTTATCTCAGTTCGCCCGGACTTTTCCTGCGGTCAGGTTGGAGGTCAATGTCAGTATCGGGCTGGATCTTTGTG
GGATGGTGAAGGGCAACGAACTGGATTTAGCCGTCGTGATGTCGCTGGCTAACCGTATTGAGGGCCGGTTATTGCGCAGG
ACGCAATTGGTGTGGGTAGCGGCTGAGACATTCAGCCTTGAGGGCAGGTCGTTGCCGCTGGCATTGTTTCCCATGCCGTC
GGTCAGTCGCGAGGCCGGGATCGCCGCTTTGGAAAGCAAGGCTATCGAATGGCATACCGCCTTCACCTCACAAAGCCAGC
AAGGGCTACGGGCGGCCGTGCTGGCGGGGCTGGGCGTTGCCGTCATGGCAAGCGGCGATGTGGCACCGGGAATGAAAGTG
ATCGGCGACCAGTACGGACTACCCGAATTGCCCGACATCGATTTCACCCTGATCGTCAACGGCGCTGAACCTGGCGCGGC
TGCGCAGGCATTCTGCAAAATACTGCTGGAGATGTCGGTGCCGTTGCCTGCCGTTGGGGGAGATTAA

Upstream 100 bases:

>100_bases
AAAGGTTACGGAAACGAGTAACCATTCTGGATAAATGATTTGCATGATAGAAATGATTTAATTTACTGTTATTAATTAAA
TTCCATCATGTAATCATCCT

Downstream 100 bases:

>100_bases
GTGCGGCTCAGGGCAGTGGCCAGTCGGTGGGGGTGTTGCTGACCACTTCGACATACATATCCCAGGCGTGGGACCAGAAC
TGCGTAAAGCCTTCCTGGCT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: Pectinase gene transcriptional regulator [H]

Number of amino acids: Translated: 288; Mature: 288

Protein sequence:

>288_residues
MNIDPTLLRTFVAVTETGGFTRAAQLQNLTQSAISHQIRRLEEQIGRQLLHRTTRRLTLTEDGEDLLRHAMQVLHALDAM
RRRFESSPVSGVVRFGLTESFLGERLPPLLSQFARTFPAVRLEVNVSIGLDLCGMVKGNELDLAVVMSLANRIEGRLLRR
TQLVWVAAETFSLEGRSLPLALFPMPSVSREAGIAALESKAIEWHTAFTSQSQQGLRAAVLAGLGVAVMASGDVAPGMKV
IGDQYGLPELPDIDFTLIVNGAEPGAAAQAFCKILLEMSVPLPAVGGD

Sequences:

>Translated_288_residues
MNIDPTLLRTFVAVTETGGFTRAAQLQNLTQSAISHQIRRLEEQIGRQLLHRTTRRLTLTEDGEDLLRHAMQVLHALDAM
RRRFESSPVSGVVRFGLTESFLGERLPPLLSQFARTFPAVRLEVNVSIGLDLCGMVKGNELDLAVVMSLANRIEGRLLRR
TQLVWVAAETFSLEGRSLPLALFPMPSVSREAGIAALESKAIEWHTAFTSQSQQGLRAAVLAGLGVAVMASGDVAPGMKV
IGDQYGLPELPDIDFTLIVNGAEPGAAAQAFCKILLEMSVPLPAVGGD
>Mature_288_residues
MNIDPTLLRTFVAVTETGGFTRAAQLQNLTQSAISHQIRRLEEQIGRQLLHRTTRRLTLTEDGEDLLRHAMQVLHALDAM
RRRFESSPVSGVVRFGLTESFLGERLPPLLSQFARTFPAVRLEVNVSIGLDLCGMVKGNELDLAVVMSLANRIEGRLLRR
TQLVWVAAETFSLEGRSLPLALFPMPSVSREAGIAALESKAIEWHTAFTSQSQQGLRAAVLAGLGVAVMASGDVAPGMKV
IGDQYGLPELPDIDFTLIVNGAEPGAAAQAFCKILLEMSVPLPAVGGD

Specific function: Regulates pectinase gene expression [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788626, Length=276, Percent_Identity=32.2463768115942, Blast_Score=134, Evalue=7e-33,
Organism=Escherichia coli, GI87082132, Length=255, Percent_Identity=27.4509803921569, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI157672245, Length=143, Percent_Identity=31.4685314685315, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1786713, Length=78, Percent_Identity=48.7179487179487, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1787806, Length=235, Percent_Identity=26.3829787234043, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI145693193, Length=120, Percent_Identity=35, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787589, Length=126, Percent_Identity=36.5079365079365, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1786448, Length=145, Percent_Identity=35.1724137931034, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1789173, Length=144, Percent_Identity=29.8611111111111, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1787879, Length=126, Percent_Identity=40.4761904761905, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI145693105, Length=144, Percent_Identity=29.1666666666667, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI1786401, Length=118, Percent_Identity=34.7457627118644, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1790208, Length=140, Percent_Identity=32.1428571428571, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1787601, Length=140, Percent_Identity=27.8571428571429, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1790399, Length=258, Percent_Identity=25.5813953488372, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI1788748, Length=150, Percent_Identity=26.6666666666667, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1788297, Length=142, Percent_Identity=28.8732394366197, Blast_Score=61, Evalue=1e-10,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 31192; Mature: 31192

Theoretical pI: Translated: 6.37; Mature: 6.37

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIDPTLLRTFVAVTETGGFTRAAQLQNLTQSAISHQIRRLEEQIGRQLLHRTTRRLTLT
CCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEC
EDGEDLLRHAMQVLHALDAMRRRFESSPVSGVVRFGLTESFLGERLPPLLSQFARTFPAV
CCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHCCCHHHHHHHHHCCEE
RLEVNVSIGLDLCGMVKGNELDLAVVMSLANRIEGRLLRRTQLVWVAAETFSLEGRSLPL
EEEEEEEECCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCCCCCCE
ALFPMPSVSREAGIAALESKAIEWHTAFTSQSQQGLRAAVLAGLGVAVMASGDVAPGMKV
EEECCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCEEEEECCCCCCCHHH
IGDQYGLPELPDIDFTLIVNGAEPGAAAQAFCKILLEMSVPLPAVGGD
HCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MNIDPTLLRTFVAVTETGGFTRAAQLQNLTQSAISHQIRRLEEQIGRQLLHRTTRRLTLT
CCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEC
EDGEDLLRHAMQVLHALDAMRRRFESSPVSGVVRFGLTESFLGERLPPLLSQFARTFPAV
CCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHCCCHHHHHHHHHCCEE
RLEVNVSIGLDLCGMVKGNELDLAVVMSLANRIEGRLLRRTQLVWVAAETFSLEGRSLPL
EEEEEEEECCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCCCCCCE
ALFPMPSVSREAGIAALESKAIEWHTAFTSQSQQGLRAAVLAGLGVAVMASGDVAPGMKV
EEECCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCEEEEECCCCCCCHHH
IGDQYGLPELPDIDFTLIVNGAEPGAAAQAFCKILLEMSVPLPAVGGD
HCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8626286 [H]