BacMap

Definition	Serratia proteamaculans 568 chromosome, complete genome.
Accession	NC_009832
Length	5,448,853

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The map label for this gene is ydfG [H]

Identifier: 157370530

GI number: 157370530

Start: 2492920

End: 2493669

Strand: Reverse

Name: ydfG [H]

Synonym: Spro_2290

Alternate gene names: 157370530

Gene position: 2493669-2492920 (Counterclockwise)

Preceding gene: 157370531

Following gene: 157370528

Centisome position: 45.77

GC content: 58.27

Gene sequence:

>750_bases
ATGATCATTTTTGTTACGGGTGCCACATCCGGATTTGGTGAGGCCATTACACGGCGTTTTATCCGCGAAGGCCATCAGGT
GATTGCCTCTGGCCGTCGTATCGAACGTCTGGAAGAGTTGAAAGACGAGCTGGGTGAAGCACTGCATATCGTCCGCCTCG
ACGTGCGTAATCGCGCGGCCATTCAGCAGGTGATTGATGAGCTGCCGGCAGCGCTGCGCCACATTGACATACTGGTCAAT
AATGCCGGGCTGGCGCTGGGTCTGGAGCCGGCGCACAAGGCCAACGCCGACGACTGGGAAACCATGATCGACACCAACAC
CAAAGGCCTGGTGAATATGACCCGCGCCCTGCTGCCGGACATGGTCGAACGCAACATTGGCCACGTAATCAACATCGGCT
CGGTCGCAGCCAACTGGCCGTATGCCGGTGGCAACGTTTATGGCGCAACCAAAGCCTTCGTCAAACAGTTCAGCCTCGGT
CTGCGTGCCGATCTGCACGGTACCCGCATCCGTGTGACCGATATTGAGCCGGGCCTGGTGGGCGGCACCGAATTTTCCAA
CGTGCGCTTCAAAGGCGACGACGGCAAGGTGGATAAGGTCTACGACGGTGCCAATGCGCTGACGCCGGAGGATATCGCCG
AGTCGGTGTTCTGGGTCGCGACCCTGCCGGCCCACGTCAACATTAACTCACTGGAAATCATGCCGGTCAGCCAATCCTTT
GCCGGGTTGAATATCCACCGCGAGTCTTAA

Upstream 100 bases:

>100_bases
GGCGGTTTTTCAGTGTGGAAGCCGATAACCACTGCCACTTAAAGTGGGATTATGCTAATGCTAGTAGCATGTAGGGTAAA
AACAGTTGAGGAACAGCAAC

Downstream 100 bases:

>100_bases
TCCTGAGCGGCAGGGCCTGTCCCTGCCGTCGTTTCTCAGGCCGCGCGCCAGCCGGAAACGATAATCAACATGCCGGCCAG
GGCCACGCCGGCCCCTAACC

Product: 3-hydroxy acid dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 249; Mature: 249

Protein sequence:

>249_residues
MIIFVTGATSGFGEAITRRFIREGHQVIASGRRIERLEELKDELGEALHIVRLDVRNRAAIQQVIDELPAALRHIDILVN
NAGLALGLEPAHKANADDWETMIDTNTKGLVNMTRALLPDMVERNIGHVINIGSVAANWPYAGGNVYGATKAFVKQFSLG
LRADLHGTRIRVTDIEPGLVGGTEFSNVRFKGDDGKVDKVYDGANALTPEDIAESVFWVATLPAHVNINSLEIMPVSQSF
AGLNIHRES

Sequences:

>Translated_249_residues
MIIFVTGATSGFGEAITRRFIREGHQVIASGRRIERLEELKDELGEALHIVRLDVRNRAAIQQVIDELPAALRHIDILVN
NAGLALGLEPAHKANADDWETMIDTNTKGLVNMTRALLPDMVERNIGHVINIGSVAANWPYAGGNVYGATKAFVKQFSLG
LRADLHGTRIRVTDIEPGLVGGTEFSNVRFKGDDGKVDKVYDGANALTPEDIAESVFWVATLPAHVNINSLEIMPVSQSF
AGLNIHRES
>Mature_249_residues
MIIFVTGATSGFGEAITRRFIREGHQVIASGRRIERLEELKDELGEALHIVRLDVRNRAAIQQVIDELPAALRHIDILVN
NAGLALGLEPAHKANADDWETMIDTNTKGLVNMTRALLPDMVERNIGHVINIGSVAANWPYAGGNVYGATKAFVKQFSLG
LRADLHGTRIRVTDIEPGLVGGTEFSNVRFKGDDGKVDKVYDGANALTPEDIAESVFWVATLPAHVNINSLEIMPVSQSF
AGLNIHRES

Specific function: Catalyzes the NADP-dependent oxidation of L-allo- threonine and L-serine [H]

COG id: COG4221

COG function: function code R; Short-chain alcohol dehydrogenase of unknown specificity

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI109715829, Length=248, Percent_Identity=33.0645161290323, Blast_Score=126, Evalue=2e-29,
Organism=Homo sapiens, GI20149619, Length=188, Percent_Identity=31.3829787234043, Blast_Score=93, Evalue=2e-19,
Organism=Homo sapiens, GI150247226, Length=190, Percent_Identity=32.1052631578947, Blast_Score=90, Evalue=2e-18,
Organism=Homo sapiens, GI4557649, Length=178, Percent_Identity=32.5842696629214, Blast_Score=88, Evalue=7e-18,
Organism=Homo sapiens, GI40548397, Length=179, Percent_Identity=33.5195530726257, Blast_Score=85, Evalue=7e-17,
Organism=Homo sapiens, GI214010158, Length=179, Percent_Identity=33.5195530726257, Blast_Score=85, Evalue=7e-17,
Organism=Homo sapiens, GI214010156, Length=179, Percent_Identity=33.5195530726257, Blast_Score=85, Evalue=7e-17,
Organism=Homo sapiens, GI22758144, Length=179, Percent_Identity=33.5195530726257, Blast_Score=85, Evalue=7e-17,
Organism=Homo sapiens, GI22507405, Length=180, Percent_Identity=33.3333333333333, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI157739938, Length=187, Percent_Identity=26.7379679144385, Blast_Score=82, Evalue=4e-16,
Organism=Homo sapiens, GI7705855, Length=191, Percent_Identity=28.2722513089005, Blast_Score=82, Evalue=6e-16,
Organism=Homo sapiens, GI7706318, Length=190, Percent_Identity=29.4736842105263, Blast_Score=78, Evalue=6e-15,
Organism=Homo sapiens, GI7657478, Length=207, Percent_Identity=28.9855072463768, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI19923817, Length=188, Percent_Identity=26.063829787234, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI32483357, Length=195, Percent_Identity=29.2307692307692, Blast_Score=76, Evalue=4e-14,
Organism=Homo sapiens, GI50726952, Length=180, Percent_Identity=32.7777777777778, Blast_Score=74, Evalue=9e-14,
Organism=Homo sapiens, GI10190704, Length=187, Percent_Identity=28.3422459893048, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI19743808, Length=179, Percent_Identity=29.608938547486, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI5031737, Length=199, Percent_Identity=30.6532663316583, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI40254992, Length=180, Percent_Identity=26.6666666666667, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI33667109, Length=193, Percent_Identity=30.5699481865285, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI66933014, Length=165, Percent_Identity=30.9090909090909, Blast_Score=66, Evalue=3e-11,
Organism=Escherichia coli, GI1787820, Length=248, Percent_Identity=75.4032258064516, Blast_Score=404, Evalue=1e-114,
Organism=Escherichia coli, GI87082100, Length=181, Percent_Identity=35.9116022099448, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1787335, Length=179, Percent_Identity=29.608938547486, Blast_Score=81, Evalue=8e-17,
Organism=Escherichia coli, GI1786812, Length=242, Percent_Identity=23.5537190082645, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1790717, Length=179, Percent_Identity=28.4916201117318, Blast_Score=64, Evalue=8e-12,
Organism=Escherichia coli, GI1787526, Length=224, Percent_Identity=26.7857142857143, Blast_Score=63, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17559104, Length=242, Percent_Identity=26.8595041322314, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17562910, Length=239, Percent_Identity=26.3598326359833, Blast_Score=82, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI71994600, Length=186, Percent_Identity=25.2688172043011, Blast_Score=80, Evalue=7e-16,
Organism=Caenorhabditis elegans, GI17565030, Length=245, Percent_Identity=30.6122448979592, Blast_Score=80, Evalue=8e-16,
Organism=Caenorhabditis elegans, GI17560332, Length=247, Percent_Identity=29.5546558704453, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI71994604, Length=184, Percent_Identity=25.5434782608696, Blast_Score=77, Evalue=6e-15,
Organism=Caenorhabditis elegans, GI17538480, Length=240, Percent_Identity=27.9166666666667, Blast_Score=77, Evalue=6e-15,
Organism=Caenorhabditis elegans, GI17560150, Length=189, Percent_Identity=29.1005291005291, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17562990, Length=239, Percent_Identity=26.7782426778243, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17551412, Length=247, Percent_Identity=27.9352226720648, Blast_Score=75, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17562904, Length=241, Percent_Identity=29.4605809128631, Blast_Score=74, Evalue=7e-14,
Organism=Caenorhabditis elegans, GI17560676, Length=229, Percent_Identity=26.6375545851528, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI25152911, Length=206, Percent_Identity=31.0679611650485, Blast_Score=71, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI17544670, Length=243, Percent_Identity=23.0452674897119, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17563726, Length=244, Percent_Identity=25.4098360655738, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17559552, Length=187, Percent_Identity=29.4117647058824, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17562908, Length=187, Percent_Identity=26.7379679144385, Blast_Score=67, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI17560220, Length=244, Percent_Identity=25, Blast_Score=66, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17508895, Length=190, Percent_Identity=26.8421052631579, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI212646214, Length=185, Percent_Identity=27.027027027027, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17557668, Length=187, Percent_Identity=29.4117647058824, Blast_Score=65, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17561402, Length=234, Percent_Identity=27.7777777777778, Blast_Score=65, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI72000259, Length=242, Percent_Identity=25.6198347107438, Blast_Score=65, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17562906, Length=190, Percent_Identity=26.3157894736842, Blast_Score=64, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI193204405, Length=191, Percent_Identity=26.7015706806283, Blast_Score=64, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI17536025, Length=232, Percent_Identity=24.1379310344828, Blast_Score=64, Evalue=9e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=245, Percent_Identity=34.6938775510204, Blast_Score=155, Evalue=4e-39,
Organism=Saccharomyces cerevisiae, GI6322227, Length=196, Percent_Identity=25.5102040816327, Blast_Score=80, Evalue=4e-16,
Organism=Saccharomyces cerevisiae, GI6322067, Length=176, Percent_Identity=30.1136363636364, Blast_Score=77, Evalue=3e-15,
Organism=Saccharomyces cerevisiae, GI6322226, Length=193, Percent_Identity=26.4248704663212, Blast_Score=71, Evalue=2e-13,
Organism=Drosophila melanogaster, GI116007236, Length=253, Percent_Identity=33.201581027668, Blast_Score=125, Evalue=2e-29,
Organism=Drosophila melanogaster, GI21358495, Length=226, Percent_Identity=30.9734513274336, Blast_Score=108, Evalue=5e-24,
Organism=Drosophila melanogaster, GI24641232, Length=255, Percent_Identity=30.9803921568627, Blast_Score=100, Evalue=9e-22,
Organism=Drosophila melanogaster, GI23397609, Length=203, Percent_Identity=33.0049261083744, Blast_Score=100, Evalue=1e-21,
Organism=Drosophila melanogaster, GI281364494, Length=250, Percent_Identity=31.6, Blast_Score=99, Evalue=2e-21,
Organism=Drosophila melanogaster, GI24641388, Length=266, Percent_Identity=30.0751879699248, Blast_Score=97, Evalue=1e-20,
Organism=Drosophila melanogaster, GI116007234, Length=253, Percent_Identity=31.6205533596838, Blast_Score=96, Evalue=2e-20,
Organism=Drosophila melanogaster, GI24643142, Length=179, Percent_Identity=30.7262569832402, Blast_Score=94, Evalue=6e-20,
Organism=Drosophila melanogaster, GI116007238, Length=186, Percent_Identity=33.8709677419355, Blast_Score=93, Evalue=2e-19,
Organism=Drosophila melanogaster, GI24648693, Length=254, Percent_Identity=29.9212598425197, Blast_Score=90, Evalue=1e-18,
Organism=Drosophila melanogaster, GI21355889, Length=254, Percent_Identity=29.9212598425197, Blast_Score=90, Evalue=1e-18,
Organism=Drosophila melanogaster, GI24663911, Length=252, Percent_Identity=28.1746031746032, Blast_Score=88, Evalue=4e-18,
Organism=Drosophila melanogaster, GI24640442, Length=193, Percent_Identity=29.5336787564767, Blast_Score=86, Evalue=2e-17,
Organism=Drosophila melanogaster, GI28571387, Length=252, Percent_Identity=26.984126984127, Blast_Score=85, Evalue=4e-17,
Organism=Drosophila melanogaster, GI161076933, Length=180, Percent_Identity=30, Blast_Score=84, Evalue=9e-17,
Organism=Drosophila melanogaster, GI24584748, Length=180, Percent_Identity=30, Blast_Score=84, Evalue=1e-16,
Organism=Drosophila melanogaster, GI28571526, Length=183, Percent_Identity=28.4153005464481, Blast_Score=82, Evalue=4e-16,
Organism=Drosophila melanogaster, GI21357041, Length=183, Percent_Identity=26.775956284153, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI24644339, Length=182, Percent_Identity=25.2747252747253, Blast_Score=74, Evalue=6e-14,
Organism=Drosophila melanogaster, GI24584744, Length=181, Percent_Identity=29.2817679558011, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI28574402, Length=181, Percent_Identity=29.2817679558011, Blast_Score=73, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24639444, Length=241, Percent_Identity=29.045643153527, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI17737361, Length=191, Percent_Identity=30.3664921465969, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI21355631, Length=179, Percent_Identity=27.3743016759777, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI116007232, Length=186, Percent_Identity=32.7956989247312, Blast_Score=68, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24580925, Length=210, Percent_Identity=24.2857142857143, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24584752, Length=182, Percent_Identity=26.9230769230769, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI221331216, Length=228, Percent_Identity=25.4385964912281, Blast_Score=65, Evalue=6e-11,
Organism=Drosophila melanogaster, GI24665247, Length=228, Percent_Identity=25.4385964912281, Blast_Score=64, Evalue=7e-11,

Paralogues:

None

Copy number: 1300 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 27168; Mature: 27168

Theoretical pI: Translated: 5.85; Mature: 5.85

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIIFVTGATSGFGEAITRRFIREGHQVIASGRRIERLEELKDELGEALHIVRLDVRNRAA
CEEEEECCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHEEEEEECCCCHHH
IQQVIDELPAALRHIDILVNNAGLALGLEPAHKANADDWETMIDTNTKGLVNMTRALLPD
HHHHHHHHHHHHHHHHHEEECCCEEEECCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHH
MVERNIGHVINIGSVAANWPYAGGNVYGATKAFVKQFSLGLRADLHGTRIRVTDIEPGLV
HHHHCCCCEEEECCEECCCCCCCCCCCHHHHHHHHHHHCCCEECCCCCEEEEEECCCCCC
GGTEFSNVRFKGDDGKVDKVYDGANALTPEDIAESVFWVATLPAHVNINSLEIMPVSQSF
CCCCCCCEEEECCCCCEEEEECCCCCCCHHHHHHHEEEEEECCCEECCCEEEEEECCCCC
AGLNIHRES
CCCEEEECC
>Mature Secondary Structure
MIIFVTGATSGFGEAITRRFIREGHQVIASGRRIERLEELKDELGEALHIVRLDVRNRAA
CEEEEECCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHEEEEEECCCCHHH
IQQVIDELPAALRHIDILVNNAGLALGLEPAHKANADDWETMIDTNTKGLVNMTRALLPD
HHHHHHHHHHHHHHHHHEEECCCEEEECCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHH
MVERNIGHVINIGSVAANWPYAGGNVYGATKAFVKQFSLGLRADLHGTRIRVTDIEPGLV
HHHHCCCCEEEECCEECCCCCCCCCCCHHHHHHHHHHHCCCEECCCCCEEEEEECCCCCC
GGTEFSNVRFKGDDGKVDKVYDGANALTPEDIAESVFWVATLPAHVNINSLEIMPVSQSF
CCCCCCCEEEECCCCCEEEEECCCCCCCHHHHHHHEEEEEECCCEECCCEEEEEECCCCC
AGLNIHRES
CCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]