| Definition | Serratia proteamaculans 568 chromosome, complete genome. |
|---|---|
| Accession | NC_009832 |
| Length | 5,448,853 |
Click here to switch to the map view.
The map label for this gene is ydhF [H]
Identifier: 157370448
GI number: 157370448
Start: 2409025
End: 2409921
Strand: Direct
Name: ydhF [H]
Synonym: Spro_2208
Alternate gene names: 157370448
Gene position: 2409025-2409921 (Clockwise)
Preceding gene: 157370447
Following gene: 157370450
Centisome position: 44.21
GC content: 56.86
Gene sequence:
>897_bases ATGGTAAACCGTGTACAGCTCGCGCCGCAGGGGCCTGAATTTTCCCGCATGATTTGCGGATACTGGCGTTTGATGGAGTG GGGCATGTCACCACAGCAGTTGCTGACGTTTATTGAGCAGCATATTGAGCTGGGTGTCACTACCGCTGACCATGCGGACA TTTACGGCGGCTATGTCTGTGAACAAGCCTTTGGTGAAGCGATGCGTCTGAAGCCTTCACTGCGCCAGTCGATGGAACTG GTGTCCAAATGCGGTATCGCCACCACCGCCAAACCGGGTAACCCGATTGGCCACTACATTACTGACCGTGAGCATATCGT TAACAGTGCGGAACGCTCACTGGAGCATCTGCATACCGATTACCTCGATCTGCTGCTGATCCACCGTCCGGATCCGTTAA TGGATGCCGATGAGGTGGCCGAAGCCTTTGTGGCGCTGCATAAAAGCGGCAAGGTACGCCATTTCGGCGTATCCAACTTC ACCACCACGCAGTTCACGCTGTTGCAGTCGCGTCTGCCGTTCTCACTGGTGACCAATCAACTGGAGATTTCGCCGATCCA TCAGCCAGCTATTCTGGATGGCACGCTGGATCAGTGTCAGCAATTGCGCATCAAGCCGATGGCCTGGTCTTGTTTGGGTG GCGGCCGTCTGTTCAGCGACGCCGAATTCCAGCCACTGCGCGATGAGCTGCAGGCGGTGGCGCTGGAGATTGGCGCCGAG TCTATCGAACAGGTGGTCTACGCCTGGGTGATGCGTTTGCCGTCGTCTCCTCTGCCGATTATTGGCTCCGGCAAGATTGA GCGCGTGCGTTCGGCGCTGCAGGCGCAGCAGTTGACGTTGAGTCGTCAGCAGTGGTTCCGTATTCGCAAGGCGGCCCTGG GTTACGACGTACCTTAA
Upstream 100 bases:
>100_bases AGTCATTTCTGATCTGCCGCACGTAAGCGCGGCTTTCCGCTTCCCACCGTGTTATCCGCTTGTGTATGCTGGCATTAAAC AATGTCATGAGGTTTCAACA
Downstream 100 bases:
>100_bases ATCACTATAATCATAAGAAGCCGGGCAGCGGTGACTGCCCGGTTTTACTTTTTGATTCCTCAGGGCTCAGGCCAGCACCA CCTGGCCGTCCGACAGGCTG
Product: aldo/keto reductase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 298; Mature: 298
Protein sequence:
>298_residues MVNRVQLAPQGPEFSRMICGYWRLMEWGMSPQQLLTFIEQHIELGVTTADHADIYGGYVCEQAFGEAMRLKPSLRQSMEL VSKCGIATTAKPGNPIGHYITDREHIVNSAERSLEHLHTDYLDLLLIHRPDPLMDADEVAEAFVALHKSGKVRHFGVSNF TTTQFTLLQSRLPFSLVTNQLEISPIHQPAILDGTLDQCQQLRIKPMAWSCLGGGRLFSDAEFQPLRDELQAVALEIGAE SIEQVVYAWVMRLPSSPLPIIGSGKIERVRSALQAQQLTLSRQQWFRIRKAALGYDVP
Sequences:
>Translated_298_residues MVNRVQLAPQGPEFSRMICGYWRLMEWGMSPQQLLTFIEQHIELGVTTADHADIYGGYVCEQAFGEAMRLKPSLRQSMEL VSKCGIATTAKPGNPIGHYITDREHIVNSAERSLEHLHTDYLDLLLIHRPDPLMDADEVAEAFVALHKSGKVRHFGVSNF TTTQFTLLQSRLPFSLVTNQLEISPIHQPAILDGTLDQCQQLRIKPMAWSCLGGGRLFSDAEFQPLRDELQAVALEIGAE SIEQVVYAWVMRLPSSPLPIIGSGKIERVRSALQAQQLTLSRQQWFRIRKAALGYDVP >Mature_298_residues MVNRVQLAPQGPEFSRMICGYWRLMEWGMSPQQLLTFIEQHIELGVTTADHADIYGGYVCEQAFGEAMRLKPSLRQSMEL VSKCGIATTAKPGNPIGHYITDREHIVNSAERSLEHLHTDYLDLLLIHRPDPLMDADEVAEAFVALHKSGKVRHFGVSNF TTTQFTLLQSRLPFSLVTNQLEISPIHQPAILDGTLDQCQQLRIKPMAWSCLGGGRLFSDAEFQPLRDELQAVALEIGAE SIEQVVYAWVMRLPSSPLPIIGSGKIERVRSALQAQQLTLSRQQWFRIRKAALGYDVP
Specific function: May function as oxidoreductase (Potential) [H]
COG id: COG4989
COG function: function code R; Predicted oxidoreductase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the aldo/keto reductase 2 family [H]
Homologues:
Organism=Escherichia coli, GI48994888, Length=298, Percent_Identity=75.503355704698, Blast_Score=486, Evalue=1e-139, Organism=Escherichia coli, GI87081735, Length=286, Percent_Identity=25.8741258741259, Blast_Score=74, Evalue=8e-15, Organism=Escherichia coli, GI1786400, Length=251, Percent_Identity=28.6852589641434, Blast_Score=72, Evalue=5e-14, Organism=Escherichia coli, GI1788081, Length=235, Percent_Identity=32.3404255319149, Blast_Score=70, Evalue=2e-13, Organism=Saccharomyces cerevisiae, GI6319958, Length=297, Percent_Identity=22.5589225589226, Blast_Score=71, Evalue=2e-13, Organism=Saccharomyces cerevisiae, GI6323998, Length=308, Percent_Identity=23.0519480519481, Blast_Score=67, Evalue=5e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001395 - InterPro: IPR020471 - InterPro: IPR023210 [H]
Pfam domain/function: PF00248 Aldo_ket_red [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 33490; Mature: 33490
Theoretical pI: Translated: 6.51; Mature: 6.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVNRVQLAPQGPEFSRMICGYWRLMEWGMSPQQLLTFIEQHIELGVTTADHADIYGGYVC CCCCEECCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH EQAFGEAMRLKPSLRQSMELVSKCGIATTAKPGNPIGHYITDREHIVNSAERSLEHLHTD HHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH YLDLLLIHRPDPLMDADEVAEAFVALHKSGKVRHFGVSNFTTTQFTLLQSRLPFSLVTNQ HHHHHEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCHHHHHCC LEISPIHQPAILDGTLDQCQQLRIKPMAWSCLGGGRLFSDAEFQPLRDELQAVALEIGAE EEECCCCCCCEECCHHHHHHHCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHH SIEQVVYAWVMRLPSSPLPIIGSGKIERVRSALQAQQLTLSRQQWFRIRKAALGYDVP HHHHHHHHHHHHCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure MVNRVQLAPQGPEFSRMICGYWRLMEWGMSPQQLLTFIEQHIELGVTTADHADIYGGYVC CCCCEECCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH EQAFGEAMRLKPSLRQSMELVSKCGIATTAKPGNPIGHYITDREHIVNSAERSLEHLHTD HHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH YLDLLLIHRPDPLMDADEVAEAFVALHKSGKVRHFGVSNFTTTQFTLLQSRLPFSLVTNQ HHHHHEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCHHHHHCC LEISPIHQPAILDGTLDQCQQLRIKPMAWSCLGGGRLFSDAEFQPLRDELQAVALEIGAE EEECCCCCCCEECCHHHHHHHCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHH SIEQVVYAWVMRLPSSPLPIIGSGKIERVRSALQAQQLTLSRQQWFRIRKAALGYDVP HHHHHHHHHHHHCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]