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The map label for this gene is ydhB [H]

Identifier: 157370434

GI number: 157370434

Start: 2396298

End: 2397242

Strand: Direct

Name: ydhB [H]

Synonym: Spro_2194

Alternate gene names: 157370434

Gene position: 2396298-2397242 (Clockwise)

Preceding gene: 157370431

Following gene: 157370438

Centisome position: 43.98

GC content: 60.95

Gene sequence:

>945_bases
ATGTGGTCTGAATATTCTCTCGATGTGGTAGATGCGGTCGCCCGCACCGGCAGCTTCAGCGCAGCGGCGCATGAGCTGCA
CCGAGTGCCCTCGGCGGTCAGTTATACCGTGCGGCAATTGGAACAATGGCTGGCGGTTCCGCTGTTTGAACGGCGTCATC
GTGACGTGGAACTGACCCCGGCCGGCGTGGTGTTTGTGCAGGAGGCACGCAGTGTGATCAAAAAAATGCTCGACACCCGC
CGCCAGTGTCAACAGGTGGCTAACGGTTGGCGTGGCCAACTGAAAATTGCGGTAGACATCATTGTTAAACCCCAGCGCTG
CCGCCAACTGGTTCTGGACTTCTATCGCCATTTCCCCGACGTAGAACTGATGGTCCAACCTGAGGTGTTTAACGGCGTCT
GGGATGCGCTGGTGGACGGGCGTGCCGATATGGCGATTGGGGCGACGCGTGCGGTGCCGGTCGGGGGCGGGTTTGCCTTT
CGCGATATGGGCGACATGCGCTGGCTGTGCGTGGTCAGCCCGCAGCATCCGCTGGCGATGATGGATGGCCTGTTGAATGA
TGAGCAACTGCGGCCTTTCCCGTCGCTGTGTCTGGAAGATACCTCGCGCAACCTGCCCAAGCGGGTCACCTGGACACTGG
ACAACCAACGGCGGCTGGTGGTGCCGGACTGGGCCTCGGCGCTGGATTGTCTGTGTGCCGGCCTGTGCGTTGGCATGATG
CCGGCGCATCAGGCCTTGCCATTGGTGCAGCGTGGGGAACTGGTAGCGTTGCAGCTGCAGCAGCCGTTTCCGGCCAGCCC
CTGTTGTCTGACCTGGCAGCAGAATACGCCATCACCGGCGATGGCCTGGCTGTTGGATTACCTGGGGGACAGTGAAACGC
TGAATCAGGAATGGCTAAGCGAAGTGGTGCCGGAAACCACAGCGGCCTCCGGCATTAGCAATTAG

Upstream 100 bases:

>100_bases
TGTCGCAGGTTTTTAGCGCCGGCAAGTGTATCCGGCTGGATCTCTGCTTGTGAAACGGTAATATTTGCGAGGTGCTGTTA
AAAAAATTGAAGGCAGGGTT

Downstream 100 bases:

>100_bases
CGGCGGTAATCGATGAATGGGCCGTCAGCGACCGAACGACGCTCAATCAGTTTCGGATGCACTTCAATCACCTGCGACTC
TTCACGCTTGCTGATAATAC

Product: putative DNA-binding transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 314; Mature: 314

Protein sequence:

>314_residues
MWSEYSLDVVDAVARTGSFSAAAHELHRVPSAVSYTVRQLEQWLAVPLFERRHRDVELTPAGVVFVQEARSVIKKMLDTR
RQCQQVANGWRGQLKIAVDIIVKPQRCRQLVLDFYRHFPDVELMVQPEVFNGVWDALVDGRADMAIGATRAVPVGGGFAF
RDMGDMRWLCVVSPQHPLAMMDGLLNDEQLRPFPSLCLEDTSRNLPKRVTWTLDNQRRLVVPDWASALDCLCAGLCVGMM
PAHQALPLVQRGELVALQLQQPFPASPCCLTWQQNTPSPAMAWLLDYLGDSETLNQEWLSEVVPETTAASGISN

Sequences:

>Translated_314_residues
MWSEYSLDVVDAVARTGSFSAAAHELHRVPSAVSYTVRQLEQWLAVPLFERRHRDVELTPAGVVFVQEARSVIKKMLDTR
RQCQQVANGWRGQLKIAVDIIVKPQRCRQLVLDFYRHFPDVELMVQPEVFNGVWDALVDGRADMAIGATRAVPVGGGFAF
RDMGDMRWLCVVSPQHPLAMMDGLLNDEQLRPFPSLCLEDTSRNLPKRVTWTLDNQRRLVVPDWASALDCLCAGLCVGMM
PAHQALPLVQRGELVALQLQQPFPASPCCLTWQQNTPSPAMAWLLDYLGDSETLNQEWLSEVVPETTAASGISN
>Mature_314_residues
MWSEYSLDVVDAVARTGSFSAAAHELHRVPSAVSYTVRQLEQWLAVPLFERRHRDVELTPAGVVFVQEARSVIKKMLDTR
RQCQQVANGWRGQLKIAVDIIVKPQRCRQLVLDFYRHFPDVELMVQPEVFNGVWDALVDGRADMAIGATRAVPVGGGFAF
RDMGDMRWLCVVSPQHPLAMMDGLLNDEQLRPFPSLCLEDTSRNLPKRVTWTLDNQRRLVVPDWASALDCLCAGLCVGMM
PAHQALPLVQRGELVALQLQQPFPASPCCLTWQQNTPSPAMAWLLDYLGDSETLNQEWLSEVVPETTAASGISN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787949, Length=311, Percent_Identity=71.0610932475884, Blast_Score=465, Evalue=1e-132,
Organism=Escherichia coli, GI1786508, Length=285, Percent_Identity=31.2280701754386, Blast_Score=183, Evalue=2e-47,
Organism=Escherichia coli, GI1786713, Length=275, Percent_Identity=31.6363636363636, Blast_Score=157, Evalue=6e-40,
Organism=Escherichia coli, GI87082024, Length=277, Percent_Identity=29.6028880866426, Blast_Score=154, Evalue=1e-38,
Organism=Escherichia coli, GI1789492, Length=284, Percent_Identity=28.8732394366197, Blast_Score=114, Evalue=7e-27,
Organism=Escherichia coli, GI157672245, Length=190, Percent_Identity=32.6315789473684, Blast_Score=82, Evalue=6e-17,
Organism=Escherichia coli, GI1787601, Length=165, Percent_Identity=25.4545454545455, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1790262, Length=173, Percent_Identity=28.3236994219653, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1789204, Length=234, Percent_Identity=25.2136752136752, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1788748, Length=226, Percent_Identity=23.8938053097345, Blast_Score=61, Evalue=9e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 35164; Mature: 35164

Theoretical pI: Translated: 5.37; Mature: 5.37

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
6.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWSEYSLDVVDAVARTGSFSAAAHELHRVPSAVSYTVRQLEQWLAVPLFERRHRDVELTP
CCCCCCHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHCCCCEEECC
AGVVFVQEARSVIKKMLDTRRQCQQVANGWRGQLKIAVDIIVKPQRCRQLVLDFYRHFPD
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCHHHHHHHHHHHHHCCC
VELMVQPEVFNGVWDALVDGRADMAIGATRAVPVGGGFAFRDMGDMRWLCVVSPQHPLAM
CEEEECCHHHHHHHHHHHCCCCCCEECCCCEEECCCCEEECCCCCEEEEEEECCCCCHHH
MDGLLNDEQLRPFPSLCLEDTSRNLPKRVTWTLDNQRRLVVPDWASALDCLCAGLCVGMM
HHCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCEEECCCHHHHHHHHHHHHHHHCC
PAHQALPLVQRGELVALQLQQPFPASPCCLTWQQNTPSPAMAWLLDYLGDSETLNQEWLS
CHHHHCCHHHCCCEEEEEECCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCHHHHH
EVVPETTAASGISN
HHCCCHHHHCCCCC
>Mature Secondary Structure
MWSEYSLDVVDAVARTGSFSAAAHELHRVPSAVSYTVRQLEQWLAVPLFERRHRDVELTP
CCCCCCHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHCCCCEEECC
AGVVFVQEARSVIKKMLDTRRQCQQVANGWRGQLKIAVDIIVKPQRCRQLVLDFYRHFPD
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCHHHHHHHHHHHHHCCC
VELMVQPEVFNGVWDALVDGRADMAIGATRAVPVGGGFAFRDMGDMRWLCVVSPQHPLAM
CEEEECCHHHHHHHHHHHCCCCCCEECCCCEEECCCCEEECCCCCEEEEEEECCCCCHHH
MDGLLNDEQLRPFPSLCLEDTSRNLPKRVTWTLDNQRRLVVPDWASALDCLCAGLCVGMM
HHCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCEEECCCHHHHHHHHHHHHHHHCC
PAHQALPLVQRGELVALQLQQPFPASPCCLTWQQNTPSPAMAWLLDYLGDSETLNQEWLS
CHHHHCCHHHCCCEEEEEECCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCHHHHH
EVVPETTAASGISN
HHCCCHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]