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The map label for this gene is yvrC [H]

Identifier: 157370380

GI number: 157370380

Start: 2336347

End: 2337531

Strand: Direct

Name: yvrC [H]

Synonym: Spro_2140

Alternate gene names: 157370380

Gene position: 2336347-2337531 (Clockwise)

Preceding gene: 157370379

Following gene: 157370383

Centisome position: 42.88

GC content: 52.49

Gene sequence:

>1185_bases
ATGGGAGCAATTCTCATTATTATTTCTGGATTAATTTCCCACGCTAAGGAGTGTTACGTGTACCGTCGAATAACCTTGCT
GGCTTTCGCCTGCGCCTTTTCTACACAGGTGATGGCGACCACTTATCCGCTCACCCTGACCGATACCTCTGGTCAAACCC
TGACGATTAAACAAGAGCCGAAACGCATTGTGGTGCAGGATGGGCGCGATATTCTGACGTTGGCCTTGCTGGACCGTGCC
GATCCCTTTACCCGGCTGGTGGCGTGGAACAACCTGCTGAAGAAGAGCGATGGTGAAACCTGGAAAATTCTGCAAAGCAA
GTGGCCAGAAGCCAAAAACGTTATCGATATGGGGTTTAGCGACAAGGGCGAGATTAACCTGGAGAGCGTTATCGCCAAAC
ACCCTGACCTGATGGTGGCGCAGCTACGCTCTAAACCTTCTCTGAGCCAGACTGGCGTACTCGACAAGCTGCAAGCGCTG
AATATCCCGGTGTTGTTTATCGATACCATGCTGAAACCGGTGGAGAACACCCCGAAAAGCATTACCTTGCTGGGGGAAAC
GCTAAACCGTGAAAGTGAAGCGAAACAGTACACGGACTTTTATCAGCAGCACTATCAGAGCATCCTCGATAAAACCAAAA
CGGTAGAACCCAAGCCGCTGGTGTTTATTGAAGCCAAAGCCGGCCTGAACGGGCTGGAATCCTGCTGTTTCACCCATGCA
CACGTCGGCTGGGGTGGGATGATTGAAGCGGTAGGCGCACGCAACGTGGGTTCTGCACTGCTACCGGGCGCGACCGGCGA
CGTATCGCTTGAGAAAGTGATCAGCATGAAGCCGGATGCGTATATTGTCTCCGGTTCCCAGTGGGCCAGTAAAACCAACG
CCGCGGTGCCTTTTGGCTATGGTGTGACGCAACAGCAGGTGGATGCTGCATTTAACCGGATGAAACAGCGCCCAGGCTTT
GCCCAGCTTTCGGCGGTAAAAGACGGTCGCTTCTACGGCATCTATCACAATTTCTATAACCACCCGTACAATATCGTTGG
GCTGGAGTATTTGGCGAAGTTTATCTACCCGAACCAGTTCAAGGATTTGGATCCGGCGAAAACCTACAGCGAGATCCTCA
GTCGTTTTACCGAAGTGCCGGAAGGCAAGGGCATTTTAGGCGCGCAGGCGCCAACAGGTAAGTAA

Upstream 100 bases:

>100_bases
TGATTTAACCTGACTGGTGCGCCGGTTCCGGCGCACCACCTTGTTGCTGTTCACATCTCTTTTCAATTAACCGAAAACAC
GCCCGGCGTTCTCTTTGATA

Downstream 100 bases:

>100_bases
GTGAAGCGGGCGCATGTTGCGCCCGTATTCATGGGTCAGGCAACGGCTGGGGTATAGGTTGAGATGATCTCCAATATGCC
GTTGATAATAAATTGCACGC

Product: periplasmic binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 394; Mature: 393

Protein sequence:

>394_residues
MGAILIIISGLISHAKECYVYRRITLLAFACAFSTQVMATTYPLTLTDTSGQTLTIKQEPKRIVVQDGRDILTLALLDRA
DPFTRLVAWNNLLKKSDGETWKILQSKWPEAKNVIDMGFSDKGEINLESVIAKHPDLMVAQLRSKPSLSQTGVLDKLQAL
NIPVLFIDTMLKPVENTPKSITLLGETLNRESEAKQYTDFYQQHYQSILDKTKTVEPKPLVFIEAKAGLNGLESCCFTHA
HVGWGGMIEAVGARNVGSALLPGATGDVSLEKVISMKPDAYIVSGSQWASKTNAAVPFGYGVTQQQVDAAFNRMKQRPGF
AQLSAVKDGRFYGIYHNFYNHPYNIVGLEYLAKFIYPNQFKDLDPAKTYSEILSRFTEVPEGKGILGAQAPTGK

Sequences:

>Translated_394_residues
MGAILIIISGLISHAKECYVYRRITLLAFACAFSTQVMATTYPLTLTDTSGQTLTIKQEPKRIVVQDGRDILTLALLDRA
DPFTRLVAWNNLLKKSDGETWKILQSKWPEAKNVIDMGFSDKGEINLESVIAKHPDLMVAQLRSKPSLSQTGVLDKLQAL
NIPVLFIDTMLKPVENTPKSITLLGETLNRESEAKQYTDFYQQHYQSILDKTKTVEPKPLVFIEAKAGLNGLESCCFTHA
HVGWGGMIEAVGARNVGSALLPGATGDVSLEKVISMKPDAYIVSGSQWASKTNAAVPFGYGVTQQQVDAAFNRMKQRPGF
AQLSAVKDGRFYGIYHNFYNHPYNIVGLEYLAKFIYPNQFKDLDPAKTYSEILSRFTEVPEGKGILGAQAPTGK
>Mature_393_residues
GAILIIISGLISHAKECYVYRRITLLAFACAFSTQVMATTYPLTLTDTSGQTLTIKQEPKRIVVQDGRDILTLALLDRAD
PFTRLVAWNNLLKKSDGETWKILQSKWPEAKNVIDMGFSDKGEINLESVIAKHPDLMVAQLRSKPSLSQTGVLDKLQALN
IPVLFIDTMLKPVENTPKSITLLGETLNRESEAKQYTDFYQQHYQSILDKTKTVEPKPLVFIEAKAGLNGLESCCFTHAH
VGWGGMIEAVGARNVGSALLPGATGDVSLEKVISMKPDAYIVSGSQWASKTNAAVPFGYGVTQQQVDAAFNRMKQRPGFA
QLSAVKDGRFYGIYHNFYNHPYNIVGLEYLAKFIYPNQFKDLDPAKTYSEILSRFTEVPEGKGILGAQAPTGK

Specific function: Probably part of an ABC transporter complex [H]

COG id: COG0614

COG function: function code P; ABC-type Fe3+-hydroxamate transport system, periplasmic component

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Fe/B12 periplasmic-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002491 [H]

Pfam domain/function: PF01497 Peripla_BP_2 [H]

EC number: NA

Molecular weight: Translated: 43545; Mature: 43413

Theoretical pI: Translated: 8.75; Mature: 8.75

Prosite motif: PS50983 FE_B12_PBP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGAILIIISGLISHAKECYVYRRITLLAFACAFSTQVMATTYPLTLTDTSGQTLTIKQEP
CCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEEEEEEEECCCCCEEEEECCC
KRIVVQDGRDILTLALLDRADPFTRLVAWNNLLKKSDGETWKILQSKWPEAKNVIDMGFS
CEEEEECCCCEEEEEHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHCCEECCCC
DKGEINLESVIAKHPDLMVAQLRSKPSLSQTGVLDKLQALNIPVLFIDTMLKPVENTPKS
CCCCCCHHHHHHCCCCHHHHHHHCCCCCCHHHHHHHHHHCCCCCEEHHHHHHHHCCCCCE
ITLLGETLNRESEAKQYTDFYQQHYQSILDKTKTVEPKPLVFIEAKAGLNGLESCCFTHA
EEEEEHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHC
HVGWGGMIEAVGARNVGSALLPGATGDVSLEKVISMKPDAYIVSGSQWASKTNAAVPFGY
CCCCCHHHHHHCCCCCCCHHCCCCCCCCCHHHHHCCCCCEEEEECCHHCCCCCCCCCCCC
GVTQQQVDAAFNRMKQRPGFAQLSAVKDGRFYGIYHNFYNHPYNIVGLEYLAKFIYPNQF
CCCHHHHHHHHHHHHCCCCCHHHHEECCCCEEEEEHHHCCCCCEEHHHHHHHHHHCCCCC
KDLDPAKTYSEILSRFTEVPEGKGILGAQAPTGK
CCCCHHHHHHHHHHHHHCCCCCCCEECCCCCCCC
>Mature Secondary Structure 
GAILIIISGLISHAKECYVYRRITLLAFACAFSTQVMATTYPLTLTDTSGQTLTIKQEP
CEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEEEEEEEECCCCCEEEEECCC
KRIVVQDGRDILTLALLDRADPFTRLVAWNNLLKKSDGETWKILQSKWPEAKNVIDMGFS
CEEEEECCCCEEEEEHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHCCEECCCC
DKGEINLESVIAKHPDLMVAQLRSKPSLSQTGVLDKLQALNIPVLFIDTMLKPVENTPKS
CCCCCCHHHHHHCCCCHHHHHHHCCCCCCHHHHHHHHHHCCCCCEEHHHHHHHHCCCCCE
ITLLGETLNRESEAKQYTDFYQQHYQSILDKTKTVEPKPLVFIEAKAGLNGLESCCFTHA
EEEEEHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHC
HVGWGGMIEAVGARNVGSALLPGATGDVSLEKVISMKPDAYIVSGSQWASKTNAAVPFGY
CCCCCHHHHHHCCCCCCCHHCCCCCCCCCHHHHHCCCCCEEEEECCHHCCCCCCCCCCCC
GVTQQQVDAAFNRMKQRPGFAQLSAVKDGRFYGIYHNFYNHPYNIVGLEYLAKFIYPNQF
CCCHHHHHHHHHHHHCCCCCHHHHEECCCCEEEEEHHHCCCCCEEHHHHHHHHHHCCCCC
KDLDPAKTYSEILSRFTEVPEGKGILGAQAPTGK
CCCCHHHHHHHHHHHHHCCCCCCCEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9639930; 9384377 [H]