Click here to switch to the map view.

The map label for this gene is ycfJ [H]

Identifier: 157370169

GI number: 157370169

Start: 2109084

End: 2109620

Strand: Direct

Name: ycfJ [H]

Synonym: Spro_1927

Alternate gene names: 157370169

Gene position: 2109084-2109620 (Clockwise)

Preceding gene: 157370168

Following gene: 157370170

Centisome position: 38.71

GC content: 55.87

Gene sequence:

>537_bases
GTGAACAAGTCAATGTTAGCCGGTGTGGGTATTGGTATTGCAGCAGCTCTGGGTATTGCTGCGGTGGCCAGTCTTGATGT
TTTTTCTTCCGGTCCGCAATACGCGCAGGTTCTTGCCGCAACGCCGATCAAAGAAACCATCAAAACACCGCGTCAGGAAT
GCCGCAATGTAACCGTCACTCATCGTGCGCCAGTGCAGGATGAGAACCGCATTGCCGGTTCGGTTCTGGGTGCAGTAGCC
GGTGGCGTTATTGGTCATCAGTTCGGTGGTGGTCGCGGTCGTGATGTGGCGACGGTGGTGGGTGCCTTGGGCGGCGGTTA
CGCCGGTAACCAGGTGCAGGGTGCGATGCAGAATAACGACAGCACCACCAGCACGCAGCAGCGATGCAGAACGGTCTACG
ACAAATCACAGAAAATGCTGGGTTACGACGTGACCTACAAAATTGGCACTCAGCAGGGCAAGATCCGCATGGATCACGAT
CCCGGCACCCAGATCCCGCTGGATAAAAGCGGCCAACTGGTGCTGAATAAAGCCTAA

Upstream 100 bases:

>100_bases
GGAATACCACGTGCCGCCAATGCGCAAAATAATAAGCGCGGTGCAATGTCGGTAAAATCCCCGGTACAAATGCGTGGTAA
CACTTTCAGGAGGATTTCCT

Downstream 100 bases:

>100_bases
TCAACAGACAAGAATTAAACCCGCGGGCAGTGTTAGTTCTGATCGTTTAACGCAGTTAAGCGAGCGGCATTAATATTGAC
GCGGGTTTCTGTATTCTTAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 178; Mature: 178

Protein sequence:

>178_residues
MNKSMLAGVGIGIAAALGIAAVASLDVFSSGPQYAQVLAATPIKETIKTPRQECRNVTVTHRAPVQDENRIAGSVLGAVA
GGVIGHQFGGGRGRDVATVVGALGGGYAGNQVQGAMQNNDSTTSTQQRCRTVYDKSQKMLGYDVTYKIGTQQGKIRMDHD
PGTQIPLDKSGQLVLNKA

Sequences:

>Translated_178_residues
MNKSMLAGVGIGIAAALGIAAVASLDVFSSGPQYAQVLAATPIKETIKTPRQECRNVTVTHRAPVQDENRIAGSVLGAVA
GGVIGHQFGGGRGRDVATVVGALGGGYAGNQVQGAMQNNDSTTSTQQRCRTVYDKSQKMLGYDVTYKIGTQQGKIRMDHD
PGTQIPLDKSGQLVLNKA
>Mature_178_residues
MNKSMLAGVGIGIAAALGIAAVASLDVFSSGPQYAQVLAATPIKETIKTPRQECRNVTVTHRAPVQDENRIAGSVLGAVA
GGVIGHQFGGGRGRDVATVVGALGGGYAGNQVQGAMQNNDSTTSTQQRCRTVYDKSQKMLGYDVTYKIGTQQGKIRMDHD
PGTQIPLDKSGQLVLNKA

Specific function: Unknown

COG id: COG3134

COG function: function code S; Predicted outer membrane lipoprotein

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To Rickettsia 17 kDa surface antigen [H]

Homologues:

Organism=Escherichia coli, GI1787353, Length=176, Percent_Identity=84.6590909090909, Blast_Score=294, Evalue=2e-81,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008816 [H]

Pfam domain/function: PF05433 Rick_17kDa_Anti [H]

EC number: NA

Molecular weight: Translated: 18511; Mature: 18511

Theoretical pI: Translated: 9.93; Mature: 9.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKSMLAGVGIGIAAALGIAAVASLDVFSSGPQYAQVLAATPIKETIKTPRQECRNVTVT
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHCCEEEE
HRAPVQDENRIAGSVLGAVAGGVIGHQFGGGRGRDVATVVGALGGGYAGNQVQGAMQNND
ECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHCCCC
STTSTQQRCRTVYDKSQKMLGYDVTYKIGTQQGKIRMDHDPGTQIPLDKSGQLVLNKA
CCHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCEEECCCCCCCCCCCCCCCEEEECC
>Mature Secondary Structure
MNKSMLAGVGIGIAAALGIAAVASLDVFSSGPQYAQVLAATPIKETIKTPRQECRNVTVT
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHCCEEEE
HRAPVQDENRIAGSVLGAVAGGVIGHQFGGGRGRDVATVVGALGGGYAGNQVQGAMQNND
ECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHCCCC
STTSTQQRCRTVYDKSQKMLGYDVTYKIGTQQGKIRMDHDPGTQIPLDKSGQLVLNKA
CCHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCEEECCCCCCCCCCCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]