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The map label for this gene is yvbU [H]

Identifier: 157369923

GI number: 157369923

Start: 1838615

End: 1839496

Strand: Reverse

Name: yvbU [H]

Synonym: Spro_1680

Alternate gene names: 157369923

Gene position: 1839496-1838615 (Counterclockwise)

Preceding gene: 157369924

Following gene: 157369922

Centisome position: 33.76

GC content: 57.6

Gene sequence:

>882_bases
ATGCACAATCTTCTCCATTGGCGTTTATTGGTTGCGGTAGCCGACAGCGGTAAAATCACCCAGGCGGCAAGCCAATGCGG
CATGACCCAATCCGCCGCCAGTCAGGCCATCGCTCAGTTGGAAGATGCGCTGAATACCTTGCTGTTGGTTCGCCTGCCGC
ACAGCGTTGCGCTTACCCAGAGTGGTGAACAAATTGTCGTTCACGCCCGCGCCATGCTGGCCGAGCTGGAGGCAATCCAA
CACTACGCGCAGCGGGCACAAAGCGCGCACGCCGGAAAGATTCGCCTGGCCAGTTTCCCCTCCGCATTCTCCCTGTTACT
GCCGCCGTTATTACGTAAATTCCGCCGTCGCTATCCTGCGATTGAACTGGTTCAATTGGAAGGTACCGACCAGGAAGTAG
AAAACTGGTTGGCACTGGAAACCGCCGACGTCGGTGTGGTGTTGAACCCAAATAGAGAACGGCAAAGCTACCCATTGGGG
CAAGACCTGTGGCTGGCCGTGACCGCCAGTCATCATCCACTGGCCAGGGGGCGGCAACCGGTGGAGTTCAGCACACTGGC
CAAACAGCCGTTTGTGCTGGCTACCGGCGGCTGCAATCTCAATGCGCAACTGTTGGCACAGCAGGCCGGGTTGGTATTAA
CCGATGTACGTATCACCGTCAGTGACTGGAACACCGCCCTGACGCTGGTTCGGGAAGACGCCGGTGTATCGTTGATTCTA
GCCTCGGTGATACCGACCGATCTCTCAGGTATTTGCGCGTTGCCTTTGGCTACGCCGCTTTATCGTCATTTTGGCCTGGT
CTGTTCGTTTGGCAGCGCGGCTTCAGCGCCGGTACAGACCCTGCTGCAATATCTACAGCAGCACCTGCCCGTCAGTAGCT
GA

Upstream 100 bases:

>100_bases
ATTGCCGGCGCAGAAGTGCTGTAACCACACACTGTCATTTTAAAAAGCGGCTATCACAGCCGCTTTTTTTTTCCTGTAAG
TTAAGTCGGACGGTGATTCG

Downstream 100 bases:

>100_bases
GCTGATAACAGGTTTCTGATATTTTAATTATTCAGTGGGCAGCGCCGACGGCATTCTGACGTTCAAGCAATTTCGCTTCT
TAGCGCAGGAACTGCCATGA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 293; Mature: 293

Protein sequence:

>293_residues
MHNLLHWRLLVAVADSGKITQAASQCGMTQSAASQAIAQLEDALNTLLLVRLPHSVALTQSGEQIVVHARAMLAELEAIQ
HYAQRAQSAHAGKIRLASFPSAFSLLLPPLLRKFRRRYPAIELVQLEGTDQEVENWLALETADVGVVLNPNRERQSYPLG
QDLWLAVTASHHPLARGRQPVEFSTLAKQPFVLATGGCNLNAQLLAQQAGLVLTDVRITVSDWNTALTLVREDAGVSLIL
ASVIPTDLSGICALPLATPLYRHFGLVCSFGSAASAPVQTLLQYLQQHLPVSS

Sequences:

>Translated_293_residues
MHNLLHWRLLVAVADSGKITQAASQCGMTQSAASQAIAQLEDALNTLLLVRLPHSVALTQSGEQIVVHARAMLAELEAIQ
HYAQRAQSAHAGKIRLASFPSAFSLLLPPLLRKFRRRYPAIELVQLEGTDQEVENWLALETADVGVVLNPNRERQSYPLG
QDLWLAVTASHHPLARGRQPVEFSTLAKQPFVLATGGCNLNAQLLAQQAGLVLTDVRITVSDWNTALTLVREDAGVSLIL
ASVIPTDLSGICALPLATPLYRHFGLVCSFGSAASAPVQTLLQYLQQHLPVSS
>Mature_293_residues
MHNLLHWRLLVAVADSGKITQAASQCGMTQSAASQAIAQLEDALNTLLLVRLPHSVALTQSGEQIVVHARAMLAELEAIQ
HYAQRAQSAHAGKIRLASFPSAFSLLLPPLLRKFRRRYPAIELVQLEGTDQEVENWLALETADVGVVLNPNRERQSYPLG
QDLWLAVTASHHPLARGRQPVEFSTLAKQPFVLATGGCNLNAQLLAQQAGLVLTDVRITVSDWNTALTLVREDAGVSLIL
ASVIPTDLSGICALPLATPLYRHFGLVCSFGSAASAPVQTLLQYLQQHLPVSS

Specific function: Positive Regulatory Protein For The Cyn Operon. [C]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI157672245, Length=259, Percent_Identity=32.4324324324324, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI145693105, Length=269, Percent_Identity=27.8810408921933, Blast_Score=85, Evalue=6e-18,
Organism=Escherichia coli, GI1787879, Length=262, Percent_Identity=31.2977099236641, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1790399, Length=278, Percent_Identity=26.2589928057554, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1787601, Length=121, Percent_Identity=33.0578512396694, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1786401, Length=116, Percent_Identity=32.7586206896552, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1788748, Length=150, Percent_Identity=28, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1788481, Length=200, Percent_Identity=27.5, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1787589, Length=179, Percent_Identity=28.4916201117318, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1788297, Length=146, Percent_Identity=30.8219178082192, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1788887, Length=180, Percent_Identity=33.3333333333333, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 31705; Mature: 31705

Theoretical pI: Translated: 7.33; Mature: 7.33

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHNLLHWRLLVAVADSGKITQAASQCGMTQSAASQAIAQLEDALNTLLLVRLPHSVALTQ
CCCHHEEEEEEEEECCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHEEEEECCCCEEECC
SGEQIVVHARAMLAELEAIQHYAQRAQSAHAGKIRLASFPSAFSLLLPPLLRKFRRRYPA
CCCEEEHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCC
IELVQLEGTDQEVENWLALETADVGVVLNPNRERQSYPLGQDLWLAVTASHHPLARGRQP
EEEEEECCCHHHHHHHHEEEECCEEEEECCCCCCCCCCCCCCEEEEEECCCCCHHCCCCC
VEFSTLAKQPFVLATGGCNLNAQLLAQQAGLVLTDVRITVSDWNTALTLVREDAGVSLIL
CCHHHHCCCCEEEEECCCCCCHHHHHHHCCEEEEEEEEEEECCCEEEEEEECCCCCEEEE
ASVIPTDLSGICALPLATPLYRHFGLVCSFGSAASAPVQTLLQYLQQHLPVSS
EHHCCCCCCCEEHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MHNLLHWRLLVAVADSGKITQAASQCGMTQSAASQAIAQLEDALNTLLLVRLPHSVALTQ
CCCHHEEEEEEEEECCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHEEEEECCCCEEECC
SGEQIVVHARAMLAELEAIQHYAQRAQSAHAGKIRLASFPSAFSLLLPPLLRKFRRRYPA
CCCEEEHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCC
IELVQLEGTDQEVENWLALETADVGVVLNPNRERQSYPLGQDLWLAVTASHHPLARGRQP
EEEEEECCCHHHHHHHHEEEECCEEEEECCCCCCCCCCCCCCEEEEEECCCCCHHCCCCC
VEFSTLAKQPFVLATGGCNLNAQLLAQQAGLVLTDVRITVSDWNTALTLVREDAGVSLIL
CCHHHHCCCCEEEEECCCCCCHHHHHHHCCEEEEEEEEEEECCCEEEEEEECCCCCEEEE
ASVIPTDLSGICALPLATPLYRHFGLVCSFGSAASAPVQTLLQYLQQHLPVSS
EHHCCCCCCCEEHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]