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The map label for this gene is ybjD [H]

Identifier: 157369911

GI number: 157369911

Start: 1823757

End: 1825421

Strand: Direct

Name: ybjD [H]

Synonym: Spro_1668

Alternate gene names: 157369911

Gene position: 1823757-1825421 (Clockwise)

Preceding gene: 157369905

Following gene: 157369913

Centisome position: 33.47

GC content: 59.16

Gene sequence:

>1665_bases
ATGTTCTTAGAGCGAATCGAGATTGTAGGTTTCCGCGGCATTAACCGGCTGTCACTGATGCTGGACGACAACACGCTGCT
GCTCGGCGAAAATGCCTGGGGTAAATCCAGCCTGCTTGACGCGCTGACCCTGCTGTTGGCACCGGAACCCAAGCTGTACC
GTTTTGAAGCGCACGATTTCCATTTCCCGCCGGGTGAGGAAGAGGCCAAAGATCGGCACCTGCAGGTGGTATTTACCTTC
TGCGAGAAAGATATCGGCCATGCTCATCTACCGCGTTACCGCCACCTGTCGCCGCTGTGGGTCAAGGGCGGGGATAACCT
GAACCGCATTTATTATCGCTGCGAAGGTGAACTGGCCGATGACGGCACGGTTTGCACCTGGCGCGGTTTCCTGGATGCCG
ACGGTAATCCGATGCAGTTGCACCATATTGAGCAACTGGCACACGCCATTATTCGTATCCACCCGGTACTGCGCCTGCGC
GATGCACGTTTTATCCGCCGCCTGCGGCCCAGCACGTTAAATGATGAACACCCGGCCGATAACAAGGCGCTGGCCCAGCA
ATTGGATCAACTGATGCGTGAGCTGGTGCGCAACCCGCAAAAGTTGACCAACGCCGAACTACGCCAGGGGCTGGCGGCTA
TGCAGCAACTGTTGGAACACTACTTTGCCGAGCAGGGGTCACAGGTGACGCGGCCGCGCCGAAAACGGCTGGATCAAGAT
CAGGATCAACAGGCATGGCGCTCCCTGGACAGCATCAACCGTATGGTGGCCGAACCCAATAGTCGCAGCATGCGTCTTAT
TTTACTGGGCATGTTTTCTACGCTGTTACAGGCCAAGGGCAGCGTCAAACTGGATCCGCACGCCCGGCCGCTGTTGCTGG
TGGAGGATCCGGAAACGCGCCTGCATCCGATCATGCTTTCGGTAGCCTGGGGGTTGCTTAACCAACTGCCGCTGCAGCGC
ATCACCACCACTAACTCCAGCGAACTGGTCTCCCTGGTGCCGGTTGAGCACGTTTGTCGGTTGGTGCGTGAGTCGGGACG
GGTGGCCACTTATCGCCTTGGGCCGCGCGGGCTGGGGCCGGAAGATGGGCGACGCATTTCTTTTCATATTCGGTTTAACC
GGCCGTCGTCGCTGTTCGCCCGTTGTTGGCTGCTGGTAGAAGGCGAAACCGAAGTCTGGCTGCTCAACGAGCTGGCTCGC
CAGTGCGGTTATCATTTTGAGGCGGAAGGGGTACGGGTAATTGAATTCGCCCAGTGCGGCCTGAAGCCGCTGCTGAGGTT
CGCCCGGCGTATGGGCATTGAGTGGCATGCGTTGGTGGATGGCGATGAGGCAGGGCGCAAATACGCCGGCACCGTCCGCG
GCATGCTGGATAACCATGAGGATAACGAGCGTGACCGGCTGACCGCGTTACCGGCGCCGGATATGGAACACTTTATGTTC
CGTGAAGGTTTCAGCCCGGTCTATTACCGGGTCGCCTCCGTGCCGAGCAATGCTCAAATGCCGGTACGCAAGGTGATCCT
CAAGGCAGTGCATCACTCGTCGAAGCCCGACCTGGCCATTGAGGTGGCGATGCAAGCGGGCGAGTGGGGCACGGACTCGG
TGCCGCCATTGCTGAAAAAAATGTTCTCACGCGTGATCTGGCTGGCGCGCGGCCGGGCCGACTAG

Upstream 100 bases:

>100_bases
AGATTTGACGTCGTCCGCTTGACCTGCAAGGGGTTTTTTGACCATGCTCTGAGGAGGCCACCCCATTAAGGACGGTGACC
GCGCGCACGGGAGGCGACAG

Downstream 100 bases:

>100_bases
GCCCCGGCAAAACGGGGTTGGTTGCTGAAATGCTCGGCCATCCCCTGTTCCAGCTCGTCCAGCAGTTGATAGCGGCGGCG
ATATTCTGCACGTTTTTTGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 554; Mature: 554

Protein sequence:

>554_residues
MFLERIEIVGFRGINRLSLMLDDNTLLLGENAWGKSSLLDALTLLLAPEPKLYRFEAHDFHFPPGEEEAKDRHLQVVFTF
CEKDIGHAHLPRYRHLSPLWVKGGDNLNRIYYRCEGELADDGTVCTWRGFLDADGNPMQLHHIEQLAHAIIRIHPVLRLR
DARFIRRLRPSTLNDEHPADNKALAQQLDQLMRELVRNPQKLTNAELRQGLAAMQQLLEHYFAEQGSQVTRPRRKRLDQD
QDQQAWRSLDSINRMVAEPNSRSMRLILLGMFSTLLQAKGSVKLDPHARPLLLVEDPETRLHPIMLSVAWGLLNQLPLQR
ITTTNSSELVSLVPVEHVCRLVRESGRVATYRLGPRGLGPEDGRRISFHIRFNRPSSLFARCWLLVEGETEVWLLNELAR
QCGYHFEAEGVRVIEFAQCGLKPLLRFARRMGIEWHALVDGDEAGRKYAGTVRGMLDNHEDNERDRLTALPAPDMEHFMF
REGFSPVYYRVASVPSNAQMPVRKVILKAVHHSSKPDLAIEVAMQAGEWGTDSVPPLLKKMFSRVIWLARGRAD

Sequences:

>Translated_554_residues
MFLERIEIVGFRGINRLSLMLDDNTLLLGENAWGKSSLLDALTLLLAPEPKLYRFEAHDFHFPPGEEEAKDRHLQVVFTF
CEKDIGHAHLPRYRHLSPLWVKGGDNLNRIYYRCEGELADDGTVCTWRGFLDADGNPMQLHHIEQLAHAIIRIHPVLRLR
DARFIRRLRPSTLNDEHPADNKALAQQLDQLMRELVRNPQKLTNAELRQGLAAMQQLLEHYFAEQGSQVTRPRRKRLDQD
QDQQAWRSLDSINRMVAEPNSRSMRLILLGMFSTLLQAKGSVKLDPHARPLLLVEDPETRLHPIMLSVAWGLLNQLPLQR
ITTTNSSELVSLVPVEHVCRLVRESGRVATYRLGPRGLGPEDGRRISFHIRFNRPSSLFARCWLLVEGETEVWLLNELAR
QCGYHFEAEGVRVIEFAQCGLKPLLRFARRMGIEWHALVDGDEAGRKYAGTVRGMLDNHEDNERDRLTALPAPDMEHFMF
REGFSPVYYRVASVPSNAQMPVRKVILKAVHHSSKPDLAIEVAMQAGEWGTDSVPPLLKKMFSRVIWLARGRAD
>Mature_554_residues
MFLERIEIVGFRGINRLSLMLDDNTLLLGENAWGKSSLLDALTLLLAPEPKLYRFEAHDFHFPPGEEEAKDRHLQVVFTF
CEKDIGHAHLPRYRHLSPLWVKGGDNLNRIYYRCEGELADDGTVCTWRGFLDADGNPMQLHHIEQLAHAIIRIHPVLRLR
DARFIRRLRPSTLNDEHPADNKALAQQLDQLMRELVRNPQKLTNAELRQGLAAMQQLLEHYFAEQGSQVTRPRRKRLDQD
QDQQAWRSLDSINRMVAEPNSRSMRLILLGMFSTLLQAKGSVKLDPHARPLLLVEDPETRLHPIMLSVAWGLLNQLPLQR
ITTTNSSELVSLVPVEHVCRLVRESGRVATYRLGPRGLGPEDGRRISFHIRFNRPSSLFARCWLLVEGETEVWLLNELAR
QCGYHFEAEGVRVIEFAQCGLKPLLRFARRMGIEWHALVDGDEAGRKYAGTVRGMLDNHEDNERDRLTALPAPDMEHFMF
REGFSPVYYRVASVPSNAQMPVRKVILKAVHHSSKPDLAIEVAMQAGEWGTDSVPPLLKKMFSRVIWLARGRAD

Specific function: Unknown

COG id: COG3593

COG function: function code L; Predicted ATP-dependent endonuclease of the OLD family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787102, Length=554, Percent_Identity=65.5234657039711, Blast_Score=716, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022602 [H]

Pfam domain/function: PF11398 DUF2813 [H]

EC number: NA

Molecular weight: Translated: 63497; Mature: 63497

Theoretical pI: Translated: 8.32; Mature: 8.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFLERIEIVGFRGINRLSLMLDDNTLLLGENAWGKSSLLDALTLLLAPEPKLYRFEAHDF
CCHHHEEEEECCCCCEEEEEECCCEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEECCCC
HFPPGEEEAKDRHLQVVFTFCEKDIGHAHLPRYRHLSPLWVKGGDNLNRIYYRCEGELAD
CCCCCCCHHHHHHHHHHEEHHHHCCCCCCCCCCCCCCCEEEECCCCCEEEEEEECCCCCC
DGTVCTWRGFLDADGNPMQLHHIEQLAHAIIRIHPVLRLRDARFIRRLRPSTLNDEHPAD
CCCEEEEECEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
NKALAQQLDQLMRELVRNPQKLTNAELRQGLAAMQQLLEHYFAEQGSQVTRPRRKRLDQD
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCC
QDQQAWRSLDSINRMVAEPNSRSMRLILLGMFSTLLQAKGSVKLDPHARPLLLVEDPETR
HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCEEEEEECCCCH
LHPIMLSVAWGLLNQLPLQRITTTNSSELVSLVPVEHVCRLVRESGRVATYRLGPRGLGP
HHHHHHHHHHHHHHHCCHHHHCCCCCHHHEEECCHHHHHHHHHHCCCEEEEEECCCCCCC
EDGRRISFHIRFNRPSSLFARCWLLVEGETEVWLLNELARQCGYHFEAEGVRVIEFAQCG
CCCCEEEEEEEECCCHHHHHEEEEEECCCCCCHHHHHHHHHCCCEECCCCEEEEHHHHCC
LKPLLRFARRMGIEWHALVDGDEAGRKYAGTVRGMLDNHEDNERDRLTALPAPDMEHFMF
HHHHHHHHHHCCCEEEEEECCHHHCCHHHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHH
REGFSPVYYRVASVPSNAQMPVRKVILKAVHHSSKPDLAIEVAMQAGEWGTDSVPPLLKK
HCCCCHHHHEEECCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCHHHHH
MFSRVIWLARGRAD
HHHHHHHHHCCCCC
>Mature Secondary Structure
MFLERIEIVGFRGINRLSLMLDDNTLLLGENAWGKSSLLDALTLLLAPEPKLYRFEAHDF
CCHHHEEEEECCCCCEEEEEECCCEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEECCCC
HFPPGEEEAKDRHLQVVFTFCEKDIGHAHLPRYRHLSPLWVKGGDNLNRIYYRCEGELAD
CCCCCCCHHHHHHHHHHEEHHHHCCCCCCCCCCCCCCCEEEECCCCCEEEEEEECCCCCC
DGTVCTWRGFLDADGNPMQLHHIEQLAHAIIRIHPVLRLRDARFIRRLRPSTLNDEHPAD
CCCEEEEECEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
NKALAQQLDQLMRELVRNPQKLTNAELRQGLAAMQQLLEHYFAEQGSQVTRPRRKRLDQD
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCC
QDQQAWRSLDSINRMVAEPNSRSMRLILLGMFSTLLQAKGSVKLDPHARPLLLVEDPETR
HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCEEEEEECCCCH
LHPIMLSVAWGLLNQLPLQRITTTNSSELVSLVPVEHVCRLVRESGRVATYRLGPRGLGP
HHHHHHHHHHHHHHHCCHHHHCCCCCHHHEEECCHHHHHHHHHHCCCEEEEEECCCCCCC
EDGRRISFHIRFNRPSSLFARCWLLVEGETEVWLLNELARQCGYHFEAEGVRVIEFAQCG
CCCCEEEEEEEECCCHHHHHEEEEEECCCCCCHHHHHHHHHCCCEECCCCEEEEHHHHCC
LKPLLRFARRMGIEWHALVDGDEAGRKYAGTVRGMLDNHEDNERDRLTALPAPDMEHFMF
HHHHHHHHHHCCCEEEEEECCHHHCCHHHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHH
REGFSPVYYRVASVPSNAQMPVRKVILKAVHHSSKPDLAIEVAMQAGEWGTDSVPPLLKK
HCCCCHHHHEEECCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCHHHHH
MFSRVIWLARGRAD
HHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]