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The map label for this gene is ybjS [H]

Identifier: 157369903

GI number: 157369903

Start: 1813592

End: 1814602

Strand: Reverse

Name: ybjS [H]

Synonym: Spro_1660

Alternate gene names: 157369903

Gene position: 1814602-1813592 (Counterclockwise)

Preceding gene: 157369904

Following gene: 157369900

Centisome position: 33.3

GC content: 58.36

Gene sequence:

>1011_bases
ATGAAGGTATTGGTCACCGGTGCAACCAGTGGGTTAGGCCGTAACGCCGTTGAATATCTGCGCCGTCAGGGCATTAAAGT
GCGCGCCACCGGTCGCAACCAGGCGATGGGCAGTCTGCTGGAAAAAATGGGTGCGGAATTCATTCATGCCGATCTCACCA
ATCTGATCTCATCGCAGGCCAAGGCCATGCTGGCCGATGTGGACGTGCTGTGGCACTGCTCCAGTTTCACTTCCCCCTGG
GGTACCGAAGAAGCCTTTGAACTGGCCAACGTGCGCGCCACCCGTCGCCTGGGCGAATGGGCGGCGGCCTACGGCGTTTC
GCAGTTTATCCATATCTCTTCGCCGGCGGTTTACTTCGACTATCACCACCATCGCAATGTTACCGAAGACTTCCGCCCTG
TACGCTATGCCAACGAGTTTGCCCGCAGCAAGGCCGCCGGTGAACAAGTGATCCAACAGTTGGCGCTGTCCAACCCGCAG
ACCCACTTCACCATCCTGCGCCCTCAGGGGTTATTCGGACCGCACGACAAGGTGATGCTGCCGCGTCTGTTACAGATGAT
CAAACGCTATGGCAACCTGTTGCTGCCACGCGGCGGTGCCGCGCTGGTGGACATGACCTATCTGGAAAACGCAGTGCACG
CCATGTGGCTGGCGACCCAGAAAGAAAATACCCCGTCGGGCCGCGCCTACAACATCACCAACCAGCAGCCGCGTCAGCTA
CGCAGCGTGGTGCAGCAGTTGATCGACGAGTTGGGCATGAAGTGTCGGATCCGCTCGGTCCCCTACCCAATGCTCGACAT
GATGGCGCGTGGCATGGAAAAGCTCGGCAGCAAAAGTGAAAAAGAGCCGGTACTGACCCACTATGGCGTCGCCAAGCTCA
ATTTTGATCTGACGCTGGACACCACACGTGCCCAGCAAGAGCTGGATTACCGGCCAATTATTTCGCTGGATGAAGGTATC
TCGCGTACCGCCCGCTGGCTGAAGGATCACGGCAAGCTGCACGGCCTGTAA

Upstream 100 bases:

>100_bases
ATTGCATAGAGCACGAAATAACGGAAGAATGGCATCTTATTTGCTGTAGCGCCGCTGAAGGCCGTCAGCATTCTGATTTT
TGGTGAGAATAGAGTTCGTT

Downstream 100 bases:

>100_bases
TTAACGGGCGGCTCCGTATTTCAGCAACAGCGCATCGACAATCGCCTCACTCTCCGCATCCGGCTCACCGCGATAATCGC
TGGGCCGGAAATGCATCTGA

Product: NAD-dependent epimerase/dehydratase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 336; Mature: 336

Protein sequence:

>336_residues
MKVLVTGATSGLGRNAVEYLRRQGIKVRATGRNQAMGSLLEKMGAEFIHADLTNLISSQAKAMLADVDVLWHCSSFTSPW
GTEEAFELANVRATRRLGEWAAAYGVSQFIHISSPAVYFDYHHHRNVTEDFRPVRYANEFARSKAAGEQVIQQLALSNPQ
THFTILRPQGLFGPHDKVMLPRLLQMIKRYGNLLLPRGGAALVDMTYLENAVHAMWLATQKENTPSGRAYNITNQQPRQL
RSVVQQLIDELGMKCRIRSVPYPMLDMMARGMEKLGSKSEKEPVLTHYGVAKLNFDLTLDTTRAQQELDYRPIISLDEGI
SRTARWLKDHGKLHGL

Sequences:

>Translated_336_residues
MKVLVTGATSGLGRNAVEYLRRQGIKVRATGRNQAMGSLLEKMGAEFIHADLTNLISSQAKAMLADVDVLWHCSSFTSPW
GTEEAFELANVRATRRLGEWAAAYGVSQFIHISSPAVYFDYHHHRNVTEDFRPVRYANEFARSKAAGEQVIQQLALSNPQ
THFTILRPQGLFGPHDKVMLPRLLQMIKRYGNLLLPRGGAALVDMTYLENAVHAMWLATQKENTPSGRAYNITNQQPRQL
RSVVQQLIDELGMKCRIRSVPYPMLDMMARGMEKLGSKSEKEPVLTHYGVAKLNFDLTLDTTRAQQELDYRPIISLDEGI
SRTARWLKDHGKLHGL
>Mature_336_residues
MKVLVTGATSGLGRNAVEYLRRQGIKVRATGRNQAMGSLLEKMGAEFIHADLTNLISSQAKAMLADVDVLWHCSSFTSPW
GTEEAFELANVRATRRLGEWAAAYGVSQFIHISSPAVYFDYHHHRNVTEDFRPVRYANEFARSKAAGEQVIQQLALSNPQ
THFTILRPQGLFGPHDKVMLPRLLQMIKRYGNLLLPRGGAALVDMTYLENAVHAMWLATQKENTPSGRAYNITNQQPRQL
RSVVQQLIDELGMKCRIRSVPYPMLDMMARGMEKLGSKSEKEPVLTHYGVAKLNFDLTLDTTRAQQELDYRPIISLDEGI
SRTARWLKDHGKLHGL

Specific function: Unknown

COG id: COG0451

COG function: function code MG; Nucleoside-diphosphate-sugar epimerases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI193211614, Length=340, Percent_Identity=24.7058823529412, Blast_Score=105, Evalue=5e-23,
Organism=Homo sapiens, GI8393516, Length=340, Percent_Identity=24.7058823529412, Blast_Score=105, Evalue=5e-23,
Organism=Homo sapiens, GI116268111, Length=361, Percent_Identity=24.9307479224377, Blast_Score=76, Evalue=5e-14,
Organism=Homo sapiens, GI239745448, Length=334, Percent_Identity=26.6467065868263, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI310132178, Length=334, Percent_Identity=26.6467065868263, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI310113012, Length=334, Percent_Identity=26.6467065868263, Blast_Score=67, Evalue=2e-11,
Organism=Escherichia coli, GI87081792, Length=335, Percent_Identity=74.6268656716418, Blast_Score=538, Evalue=1e-154,
Organism=Caenorhabditis elegans, GI17509709, Length=264, Percent_Identity=25.7575757575758, Blast_Score=81, Evalue=8e-16,
Organism=Caenorhabditis elegans, GI17570557, Length=339, Percent_Identity=25.9587020648968, Blast_Score=72, Evalue=6e-13,
Organism=Saccharomyces cerevisiae, GI6321437, Length=294, Percent_Identity=25.1700680272109, Blast_Score=82, Evalue=9e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001509
- InterPro:   IPR016040 [H]

Pfam domain/function: PF01370 Epimerase [H]

EC number: NA

Molecular weight: Translated: 37857; Mature: 37857

Theoretical pI: Translated: 9.91; Mature: 9.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVLVTGATSGLGRNAVEYLRRQGIKVRATGRNQAMGSLLEKMGAEFIHADLTNLISSQA
CEEEEECCCCCCCHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KAMLADVDVLWHCSSFTSPWGTEEAFELANVRATRRLGEWAAAYGVSQFIHISSPAVYFD
HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCEEEEE
YHHHRNVTEDFRPVRYANEFARSKAAGEQVIQQLALSNPQTHFTILRPQGLFGPHDKVML
EHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHH
PRLLQMIKRYGNLLLPRGGAALVDMTYLENAVHAMWLATQKENTPSGRAYNITNQQPRQL
HHHHHHHHHHCCEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCHHHH
RSVVQQLIDELGMKCRIRSVPYPMLDMMARGMEKLGSKSEKEPVLTHYGVAKLNFDLTLD
HHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCEEEEEEEEEEC
TTRAQQELDYRPIISLDEGISRTARWLKDHGKLHGL
CHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MKVLVTGATSGLGRNAVEYLRRQGIKVRATGRNQAMGSLLEKMGAEFIHADLTNLISSQA
CEEEEECCCCCCCHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KAMLADVDVLWHCSSFTSPWGTEEAFELANVRATRRLGEWAAAYGVSQFIHISSPAVYFD
HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCEEEEE
YHHHRNVTEDFRPVRYANEFARSKAAGEQVIQQLALSNPQTHFTILRPQGLFGPHDKVML
EHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHH
PRLLQMIKRYGNLLLPRGGAALVDMTYLENAVHAMWLATQKENTPSGRAYNITNQQPRQL
HHHHHHHHHHCCEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCHHHH
RSVVQQLIDELGMKCRIRSVPYPMLDMMARGMEKLGSKSEKEPVLTHYGVAKLNFDLTLD
HHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCEEEEEEEEEEC
TTRAQQELDYRPIISLDEGISRTARWLKDHGKLHGL
CHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]