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The map label for this gene is ycfQ [H]

Identifier: 157369637

GI number: 157369637

Start: 1521238

End: 1521882

Strand: Direct

Name: ycfQ [H]

Synonym: Spro_1394

Alternate gene names: 157369637

Gene position: 1521238-1521882 (Clockwise)

Preceding gene: 157369634

Following gene: 157369643

Centisome position: 27.92

GC content: 55.04

Gene sequence:

>645_bases
ATGAGTATCAATGAAGAAGTCTGCGCCAAAAAAACGCGTGGCAGACCGAAGCAGTTTGATCGCGACCGTGCGCTGGACAG
CGCGCTCGATCTGTTCTGGCGGCACGGTTATGACTCTACGTCGCTGGCCGATCTGGTAGAAGTCACCGGTGCCAAAGCAC
CAACGCTGTACGCCGAGTTCGGTAACAAGGAAGGGCTGTTCCGCGCGGCGGTGGAGCGATATCTGCAAAAATACACCACC
TGCACCAATCAATTGTTGGAGCGGGATTTGCCGATAGCGGAAATCGTTGAGGCCTACGTTCGCTCTTCAGCGGAGGTGTT
TACCGATCCGGATACGCCGTCCGGCTGCTTTATGGTCTGCGCCTCTGCGGCGCTGTCTTCGTCTTCCGATGAAGTGGCCG
AGATGCTGCGTAAAAAACATCATTCGAATGAAGCCAGCCTGAGAGCCTGTTTTGACCGCAAGGTACAGCAGGGGGAGTTA
TTGGCGAAAACCGATACCGCGCTGTTGGCGAAATATATCGTCTGTACCATTGAAGGGATGTCGGTTCAGGCACGTGAAGG
AGCCAGCCGCGAGGATTTGTTCAATCTGCTCGATGCATTGATGCTGGTTTGGCCGCGCCTGAGTCAGGTGGGCAATAAGG
TCTAG

Upstream 100 bases:

>100_bases
CTAAATGTTAATCGCTTCTCGACGGCAGCGCAATATTTTTTTATAATGATCGTTAATTTAATTGCCAAGCCCTGCTGCGG
AGCGGGATAAGAGAGGGTCT

Downstream 100 bases:

>100_bases
GGAAGGGTACTCGCCAGGAAATCAGGCCGCATCGCTGCGGCCTGAGTGGGCATTACTGGTTAACCGGGATCACCGCGCCC
TGGTATTTTTGACGGATGAA

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 214; Mature: 213

Protein sequence:

>214_residues
MSINEEVCAKKTRGRPKQFDRDRALDSALDLFWRHGYDSTSLADLVEVTGAKAPTLYAEFGNKEGLFRAAVERYLQKYTT
CTNQLLERDLPIAEIVEAYVRSSAEVFTDPDTPSGCFMVCASAALSSSSDEVAEMLRKKHHSNEASLRACFDRKVQQGEL
LAKTDTALLAKYIVCTIEGMSVQAREGASREDLFNLLDALMLVWPRLSQVGNKV

Sequences:

>Translated_214_residues
MSINEEVCAKKTRGRPKQFDRDRALDSALDLFWRHGYDSTSLADLVEVTGAKAPTLYAEFGNKEGLFRAAVERYLQKYTT
CTNQLLERDLPIAEIVEAYVRSSAEVFTDPDTPSGCFMVCASAALSSSSDEVAEMLRKKHHSNEASLRACFDRKVQQGEL
LAKTDTALLAKYIVCTIEGMSVQAREGASREDLFNLLDALMLVWPRLSQVGNKV
>Mature_213_residues
SINEEVCAKKTRGRPKQFDRDRALDSALDLFWRHGYDSTSLADLVEVTGAKAPTLYAEFGNKEGLFRAAVERYLQKYTTC
TNQLLERDLPIAEIVEAYVRSSAEVFTDPDTPSGCFMVCASAALSSSSDEVAEMLRKKHHSNEASLRACFDRKVQQGELL
AKTDTALLAKYIVCTIEGMSVQAREGASREDLFNLLDALMLVWPRLSQVGNKV

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081833, Length=208, Percent_Identity=45.6730769230769, Blast_Score=195, Evalue=2e-51,
Organism=Escherichia coli, GI87082397, Length=189, Percent_Identity=25.3968253968254, Blast_Score=77, Evalue=7e-16,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 23823; Mature: 23692

Theoretical pI: Translated: 5.41; Mature: 5.41

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSINEEVCAKKTRGRPKQFDRDRALDSALDLFWRHGYDSTSLADLVEVTGAKAPTLYAEF
CCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHC
GNKEGLFRAAVERYLQKYTTCTNQLLERDLPIAEIVEAYVRSSAEVFTDPDTPSGCFMVC
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEECCCCCCCHHHHHH
ASAALSSSSDEVAEMLRKKHHSNEASLRACFDRKVQQGELLAKTDTALLAKYIVCTIEGM
HHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCC
SVQAREGASREDLFNLLDALMLVWPRLSQVGNKV
EEHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SINEEVCAKKTRGRPKQFDRDRALDSALDLFWRHGYDSTSLADLVEVTGAKAPTLYAEF
CCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHC
GNKEGLFRAAVERYLQKYTTCTNQLLERDLPIAEIVEAYVRSSAEVFTDPDTPSGCFMVC
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEECCCCCCCHHHHHH
ASAALSSSSDEVAEMLRKKHHSNEASLRACFDRKVQQGELLAKTDTALLAKYIVCTIEGM
HHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCC
SVQAREGASREDLFNLLDALMLVWPRLSQVGNKV
EEHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]