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The map label for this gene is ybdL [H]

Identifier: 157369612

GI number: 157369612

Start: 1497927

End: 1499081

Strand: Reverse

Name: ybdL [H]

Synonym: Spro_1369

Alternate gene names: 157369612

Gene position: 1499081-1497927 (Counterclockwise)

Preceding gene: 157369619

Following gene: 157369611

Centisome position: 27.51

GC content: 57.32

Gene sequence:

>1155_bases
ATGCAGAGCGCCTGCTCACACCGCTCGAAGTTGCCGGACGTCGGCACCACTATTTTCACCGTTATCGGCCAGCTTAGCGC
CGAACATCAGGCGTTGAACCTGTCGCAGGGCGCACCGAACTTCGCCTGTGAACCGCAGTTGGTTGAAGCGGTGGCGCAAG
CCATGCGCAACGGTCATAACCAGTACGCACCGATGAGCGGCGTGGCGACATTACGCACTGCACTGGCGGATAAAGTTGAA
CGTTTGTATGGCGCACGCTATGACGCCGACGAAGAAATCACGGTGATTGCCAGTGCCAGTGAAGGATTGTATTCCGCCAT
CAGCGCGCTGGTGCATCCGGGCGATGAGGTGATTTATTTCGAACCGGCGTTCGACAGCTATGCGCCGATTGTACGTCTGC
AAGGCGCTACGCCGGTCGCCATCAAACTGTCGCTGCAGGATCTGCATATTGACTGGGACGAAGTCGCCGCCGCCATCAAC
AGCAAAACGCGGATGATCATCGTTAACAGTCCGCACAACCCGACCGGCAGCGTGTTTGGCGAGCATGACATCGAACGGCT
GACCGCCCTGACGCGCAACACCGATATCGTCATCCTGTCCGACGAGGTTTATGAACACGTGGTGTTCGACGGCGATATCC
ACCACAGCATGGCGCGCCACCCACAGTTGGCAGAACGCAGCGTGATTGTGTCGTCGTTTGGCAAAACCTATCACGTGACC
GGCTGGCGTGTCGGCTACTGCATGGCGCCGGCAGCGTTGATGGACGAGATCCGCAAGGTGCATCAGTTTATGGTGTTCTC
CGCCGATACGCCGATGCAGTACGCCTTCGCCGAGGCGCTGGGCAATCCGCAAAGTTATCTGGGTCTGGCAGACTTCTATC
AACAAAAGCGTGATTTACTGGCGAGCGCGCTGCAGGATTCGCGCTTTGAATTACTGCCCAGCCGTGGCAGTTTCTTTATG
CTGGCCCGCTTTAGCGGTTTCAGTAACGAAAGCGACAACGATTTTGCGGTGCGCCTGATCCGCGAAGCCAAAGTTGCGAC
GATCCCGCTGTCGGCGTTTTACAGCGACGGCACCAACACCGGCATCATTCGACTGAGTTTTGCAAAAGACAATGAGACCC
TGCTGGAGGGCGCACGCCGTCTGTGTCAGGTATAA

Upstream 100 bases:

>100_bases
TGATCTCTGTGCATGGCGAGTATGACAAACTTTCCCTTGTTGGCCTACCCTCCGTGATGCTTAATCAAGCGATATCTCCC
CCATTTCCCTGGAGCCACTC

Downstream 100 bases:

>100_bases
GAAATTTATTTTTGCTTTGACCATGGGAAAAGGGCTCCAACTATGAAATCACTGAAAACGTTGATCGCCGCAGGCTGCCT
GCTGGCCGCCGGTTCCACGC

Product: putative aminotransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 384; Mature: 384

Protein sequence:

>384_residues
MQSACSHRSKLPDVGTTIFTVIGQLSAEHQALNLSQGAPNFACEPQLVEAVAQAMRNGHNQYAPMSGVATLRTALADKVE
RLYGARYDADEEITVIASASEGLYSAISALVHPGDEVIYFEPAFDSYAPIVRLQGATPVAIKLSLQDLHIDWDEVAAAIN
SKTRMIIVNSPHNPTGSVFGEHDIERLTALTRNTDIVILSDEVYEHVVFDGDIHHSMARHPQLAERSVIVSSFGKTYHVT
GWRVGYCMAPAALMDEIRKVHQFMVFSADTPMQYAFAEALGNPQSYLGLADFYQQKRDLLASALQDSRFELLPSRGSFFM
LARFSGFSNESDNDFAVRLIREAKVATIPLSAFYSDGTNTGIIRLSFAKDNETLLEGARRLCQV

Sequences:

>Translated_384_residues
MQSACSHRSKLPDVGTTIFTVIGQLSAEHQALNLSQGAPNFACEPQLVEAVAQAMRNGHNQYAPMSGVATLRTALADKVE
RLYGARYDADEEITVIASASEGLYSAISALVHPGDEVIYFEPAFDSYAPIVRLQGATPVAIKLSLQDLHIDWDEVAAAIN
SKTRMIIVNSPHNPTGSVFGEHDIERLTALTRNTDIVILSDEVYEHVVFDGDIHHSMARHPQLAERSVIVSSFGKTYHVT
GWRVGYCMAPAALMDEIRKVHQFMVFSADTPMQYAFAEALGNPQSYLGLADFYQQKRDLLASALQDSRFELLPSRGSFFM
LARFSGFSNESDNDFAVRLIREAKVATIPLSAFYSDGTNTGIIRLSFAKDNETLLEGARRLCQV
>Mature_384_residues
MQSACSHRSKLPDVGTTIFTVIGQLSAEHQALNLSQGAPNFACEPQLVEAVAQAMRNGHNQYAPMSGVATLRTALADKVE
RLYGARYDADEEITVIASASEGLYSAISALVHPGDEVIYFEPAFDSYAPIVRLQGATPVAIKLSLQDLHIDWDEVAAAIN
SKTRMIIVNSPHNPTGSVFGEHDIERLTALTRNTDIVILSDEVYEHVVFDGDIHHSMARHPQLAERSVIVSSFGKTYHVT
GWRVGYCMAPAALMDEIRKVHQFMVFSADTPMQYAFAEALGNPQSYLGLADFYQQKRDLLASALQDSRFELLPSRGSFFM
LARFSGFSNESDNDFAVRLIREAKVATIPLSAFYSDGTNTGIIRLSFAKDNETLLEGARRLCQV

Specific function: Shows aminotransferase activity with methionine and histidine as substrates, and to a lesser extent also with phenylalanine [H]

COG id: COG0436

COG function: function code E; Aspartate/tyrosine/aromatic aminotransferase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family [H]

Homologues:

Organism=Homo sapiens, GI56713256, Length=405, Percent_Identity=30.8641975308642, Blast_Score=209, Evalue=5e-54,
Organism=Homo sapiens, GI56713254, Length=405, Percent_Identity=30.8641975308642, Blast_Score=208, Evalue=5e-54,
Organism=Homo sapiens, GI95147551, Length=386, Percent_Identity=32.3834196891192, Blast_Score=200, Evalue=2e-51,
Organism=Homo sapiens, GI169881279, Length=386, Percent_Identity=32.3834196891192, Blast_Score=200, Evalue=2e-51,
Organism=Homo sapiens, GI169881281, Length=291, Percent_Identity=31.9587628865979, Blast_Score=155, Evalue=5e-38,
Organism=Homo sapiens, GI4507369, Length=376, Percent_Identity=25, Blast_Score=93, Evalue=4e-19,
Organism=Escherichia coli, GI1786816, Length=380, Percent_Identity=50.7894736842105, Blast_Score=385, Evalue=1e-108,
Organism=Escherichia coli, GI1788722, Length=354, Percent_Identity=24.2937853107345, Blast_Score=118, Evalue=6e-28,
Organism=Escherichia coli, GI1788627, Length=343, Percent_Identity=25.6559766763848, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1788332, Length=243, Percent_Identity=25.9259259259259, Blast_Score=75, Evalue=8e-15,
Organism=Caenorhabditis elegans, GI71994476, Length=394, Percent_Identity=33.756345177665, Blast_Score=222, Evalue=2e-58,
Organism=Caenorhabditis elegans, GI71994472, Length=394, Percent_Identity=33.756345177665, Blast_Score=222, Evalue=2e-58,
Organism=Caenorhabditis elegans, GI17567369, Length=396, Percent_Identity=32.5757575757576, Blast_Score=212, Evalue=2e-55,
Organism=Caenorhabditis elegans, GI17567663, Length=374, Percent_Identity=25.9358288770053, Blast_Score=110, Evalue=1e-24,
Organism=Saccharomyces cerevisiae, GI6322401, Length=389, Percent_Identity=28.7917737789203, Blast_Score=166, Evalue=6e-42,
Organism=Drosophila melanogaster, GI28573069, Length=392, Percent_Identity=33.6734693877551, Blast_Score=217, Evalue=1e-56,
Organism=Drosophila melanogaster, GI24646114, Length=392, Percent_Identity=33.6734693877551, Blast_Score=217, Evalue=1e-56,
Organism=Drosophila melanogaster, GI28573067, Length=392, Percent_Identity=33.6734693877551, Blast_Score=217, Evalue=1e-56,
Organism=Drosophila melanogaster, GI28573065, Length=392, Percent_Identity=33.6734693877551, Blast_Score=217, Evalue=1e-56,
Organism=Drosophila melanogaster, GI18859735, Length=363, Percent_Identity=26.9972451790634, Blast_Score=94, Evalue=2e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF00155 Aminotran_1_2 [H]

EC number: 2.6.1.- [C]

Molecular weight: Translated: 42283; Mature: 42283

Theoretical pI: Translated: 5.37; Mature: 5.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQSACSHRSKLPDVGTTIFTVIGQLSAEHQALNLSQGAPNFACEPQLVEAVAQAMRNGHN
CCCHHHHHHCCCCCHHHHHHHHHHHCCHHHHEECCCCCCCCCCCHHHHHHHHHHHHCCCC
QYAPMSGVATLRTALADKVERLYGARYDADEEITVIASASEGLYSAISALVHPGDEVIYF
CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHHCCCCCEEEE
EPAFDSYAPIVRLQGATPVAIKLSLQDLHIDWDEVAAAINSKTRMIIVNSPHNPTGSVFG
CCCCCCCCCEEEECCCCCEEEEEEEEHHCCCHHHHHHHHCCCEEEEEEECCCCCCCCCCC
EHDIERLTALTRNTDIVILSDEVYEHVVFDGDIHHSMARHPQLAERSVIVSSFGKTYHVT
CHHHHHHHHHHCCCCEEEECHHHHHHHEECCHHHHHHHCCCCHHHHHHHHHHCCCEEEEC
GWRVGYCMAPAALMDEIRKVHQFMVFSADTPMQYAFAEALGNPQSYLGLADFYQQKRDLL
CEEEHHHHCCHHHHHHHHHHHHHEEECCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
ASALQDSRFELLPSRGSFFMLARFSGFSNESDNDFAVRLIREAKVATIPLSAFYSDGTNT
HHHHHCCCEEECCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHEEEEEHHHHCCCCCCC
GIIRLSFAKDNETLLEGARRLCQV
EEEEEEECCCCHHHHHHHHHHHCC
>Mature Secondary Structure
MQSACSHRSKLPDVGTTIFTVIGQLSAEHQALNLSQGAPNFACEPQLVEAVAQAMRNGHN
CCCHHHHHHCCCCCHHHHHHHHHHHCCHHHHEECCCCCCCCCCCHHHHHHHHHHHHCCCC
QYAPMSGVATLRTALADKVERLYGARYDADEEITVIASASEGLYSAISALVHPGDEVIYF
CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHHCCCCCEEEE
EPAFDSYAPIVRLQGATPVAIKLSLQDLHIDWDEVAAAINSKTRMIIVNSPHNPTGSVFG
CCCCCCCCCEEEECCCCCEEEEEEEEHHCCCHHHHHHHHCCCEEEEEEECCCCCCCCCCC
EHDIERLTALTRNTDIVILSDEVYEHVVFDGDIHHSMARHPQLAERSVIVSSFGKTYHVT
CHHHHHHHHHHCCCCEEEECHHHHHHHEECCHHHHHHHCCCCHHHHHHHHHHCCCEEEEC
GWRVGYCMAPAALMDEIRKVHQFMVFSADTPMQYAFAEALGNPQSYLGLADFYQQKRDLL
CEEEHHHHCCHHHHHHHHHHHHHEEECCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
ASALQDSRFELLPSRGSFFMLARFSGFSNESDNDFAVRLIREAKVATIPLSAFYSDGTNT
HHHHHCCCEEECCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHEEEEEHHHHCCCCCCC
GIIRLSFAKDNETLLEGARRLCQV
EEEEEEECCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: Pyridoxal Phosphate. [C]

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]