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The map label for this gene is ydhB [H]

Identifier: 157369592

GI number: 157369592

Start: 1480047

End: 1480940

Strand: Direct

Name: ydhB [H]

Synonym: Spro_1349

Alternate gene names: 157369592

Gene position: 1480047-1480940 (Clockwise)

Preceding gene: 157369589

Following gene: 157369594

Centisome position: 27.16

GC content: 59.28

Gene sequence:

>894_bases
ATGAACTTTTCCAGCGATAACATTGAGCTGTTTCTGGCGGTACTGGATCGCGGGTCGTTTTCCGCTGCAGCCCGTTCGCT
GCGGCGTGTCCCTTCGGCGGTCAGCATGGGGATCGCCAACATGGAGGCGGAACTGGGGTTTCAGTTGTTTGATCGCTCAC
ACCGGGAACCGCTACCCACCCCGCTGGCGTTGGCACTGGCGCCGCATGCGCGGCTGATCGCCGATCAGCTAAAACAACTA
CAGAACCACGCCATCGAATTATCCCAGGGGCTGGAAAGCACTCTGTCGGTCGGTGTCGCCTCGGACATTAACAGCAGCGG
CCTGTTGGCTGCGGTCAAAACGCTGGCGGAACGCTACCCGTTGCTGAATATCGAAGTGCTGACCGCCCCGCAGGACGACG
TGTTGCATATGCTGCATCAGGGCAGGATTGGCGTTGCTCTGGCGTTCGGTGGGCTCAATATCAACAGCCAGGAGCAGTTC
CACTTTGTCGGCGCTGAATCACTGGTTGCTACGCTCTCACCTTCGCACCCGGCGCTGAACGGGGCGGCAGACGAGCTGTT
TCTCGAAGATCTGGTTAACGTACGGCAGATTATGGTGGCCAGCCGCGATTTGCCGATTACCGATTTGCGGCCGCAGGTGG
CGGAGTCCTATTGGCGTACCGATAGCCTGCCGATGGCGCTGAGCATGGTGGAGGCCGGTTTGGGCTGGGGGAATTTCCCG
CTGTCGTTGACCGCGCCCTTGTTGGCGCAGCAACGGCTGGTCAGGTTGAAATTCAAAAACACCAAAAACGAACTGCGCCT
GCCGATGCACCTGATCTGGCTGAAAAACAGGCCGCTGGAGAAGGCCGCCCATGAACTGGTGGCGTTAATGCGGGACAGGC
CGCAAGCGGAATAA

Upstream 100 bases:

>100_bases
TTGGTGGTCGGGTGACCTTTTGCCGTCTGACGAGTAAGATACCGTCAATCATATTGATAGAAAAAGTCAGGAGCTGTCAG
TTTTGCTGACAGGTGATGCA

Downstream 100 bases:

>100_bases
TCCCACGGCCTAAACCGATAATCCTAGTCTGCATGGCGGCGGCGCCACCAAAATCGCAGCAGCAAGATAACGGCGATCAC
CAGTGCGCAGAACAGCACGC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 297; Mature: 297

Protein sequence:

>297_residues
MNFSSDNIELFLAVLDRGSFSAAARSLRRVPSAVSMGIANMEAELGFQLFDRSHREPLPTPLALALAPHARLIADQLKQL
QNHAIELSQGLESTLSVGVASDINSSGLLAAVKTLAERYPLLNIEVLTAPQDDVLHMLHQGRIGVALAFGGLNINSQEQF
HFVGAESLVATLSPSHPALNGAADELFLEDLVNVRQIMVASRDLPITDLRPQVAESYWRTDSLPMALSMVEAGLGWGNFP
LSLTAPLLAQQRLVRLKFKNTKNELRLPMHLIWLKNRPLEKAAHELVALMRDRPQAE

Sequences:

>Translated_297_residues
MNFSSDNIELFLAVLDRGSFSAAARSLRRVPSAVSMGIANMEAELGFQLFDRSHREPLPTPLALALAPHARLIADQLKQL
QNHAIELSQGLESTLSVGVASDINSSGLLAAVKTLAERYPLLNIEVLTAPQDDVLHMLHQGRIGVALAFGGLNINSQEQF
HFVGAESLVATLSPSHPALNGAADELFLEDLVNVRQIMVASRDLPITDLRPQVAESYWRTDSLPMALSMVEAGLGWGNFP
LSLTAPLLAQQRLVRLKFKNTKNELRLPMHLIWLKNRPLEKAAHELVALMRDRPQAE
>Mature_297_residues
MNFSSDNIELFLAVLDRGSFSAAARSLRRVPSAVSMGIANMEAELGFQLFDRSHREPLPTPLALALAPHARLIADQLKQL
QNHAIELSQGLESTLSVGVASDINSSGLLAAVKTLAERYPLLNIEVLTAPQDDVLHMLHQGRIGVALAFGGLNINSQEQF
HFVGAESLVATLSPSHPALNGAADELFLEDLVNVRQIMVASRDLPITDLRPQVAESYWRTDSLPMALSMVEAGLGWGNFP
LSLTAPLLAQQRLVRLKFKNTKNELRLPMHLIWLKNRPLEKAAHELVALMRDRPQAE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787949, Length=267, Percent_Identity=23.9700374531835, Blast_Score=69, Evalue=3e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32608; Mature: 32608

Theoretical pI: Translated: 6.43; Mature: 6.43

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNFSSDNIELFLAVLDRGSFSAAARSLRRVPSAVSMGIANMEAELGFQLFDRSHREPLPT
CCCCCCCCEEEEEECCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
PLALALAPHARLIADQLKQLQNHAIELSQGLESTLSVGVASDINSSGLLAAVKTLAERYP
CHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCC
LLNIEVLTAPQDDVLHMLHQGRIGVALAFGGLNINSQEQFHFVGAESLVATLSPSHPALN
CEEEEEEECCHHHHHHHHHCCCEEEEEEECCCCCCCCCCEEEECHHHHHHHCCCCCCCCC
GAADELFLEDLVNVRQIMVASRDLPITDLRPQVAESYWRTDSLPMALSMVEAGLGWGNFP
CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHCCCCCCCC
LSLTAPLLAQQRLVRLKFKNTKNELRLPMHLIWLKNRPLEKAAHELVALMRDRPQAE
HHHHHHHHHHHHHHHHHCCCCCCHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MNFSSDNIELFLAVLDRGSFSAAARSLRRVPSAVSMGIANMEAELGFQLFDRSHREPLPT
CCCCCCCCEEEEEECCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
PLALALAPHARLIADQLKQLQNHAIELSQGLESTLSVGVASDINSSGLLAAVKTLAERYP
CHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCC
LLNIEVLTAPQDDVLHMLHQGRIGVALAFGGLNINSQEQFHFVGAESLVATLSPSHPALN
CEEEEEEECCHHHHHHHHHCCCEEEEEEECCCCCCCCCCEEEECHHHHHHHCCCCCCCCC
GAADELFLEDLVNVRQIMVASRDLPITDLRPQVAESYWRTDSLPMALSMVEAGLGWGNFP
CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHCCCCCCCC
LSLTAPLLAQQRLVRLKFKNTKNELRLPMHLIWLKNRPLEKAAHELVALMRDRPQAE
HHHHHHHHHHHHHHHHHCCCCCCHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]