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The map label for this gene is fimZ [H]

Identifier: 157369529

GI number: 157369529

Start: 1415512

End: 1416153

Strand: Reverse

Name: fimZ [H]

Synonym: Spro_1286

Alternate gene names: 157369529

Gene position: 1416153-1415512 (Counterclockwise)

Preceding gene: 157369531

Following gene: 157369528

Centisome position: 25.99

GC content: 56.39

Gene sequence:

>642_bases
ATGCTAACGGCCAGGATCCGTTACTCGAGCCAAGCCATGCCCTCATTGTTATTAGTTGATGACCACCCGGTGGTTCATGT
CGCACTGGAAGCGGCGCTAATCAAGTCTTCCCGCTCCTATGTTCTACAGGCGGTAGAGGATGACGTACAGGCGCTGGCCC
AGTTGGCCGCAGCCGACTTTGCACTGGTGATCCTCGATATCGGCCTGCCGCAGGTAGACGGCCTGCAGCTGCTGAAAAAG
ATTCGCCGCCATTACCCGCAGCAGTCGATCCTGATTTATACCGCCCAGGAAGAAGAGATTTATGCCCGTATGGCCTATGC
GGCCGGTGCCAACGGCTTTGTTCACAAGGGCAGCCGACTGGAACAACTGGTGCTGGCGATTGAAACCGTGCTGGCCGGGG
AACTGAGCTTTCCCGCCGCCGCGATGGCAGAAGAAACCCAGCCGACAGAAGGCTCGCTGCTGACGCCAAAAGAACTGCAG
ATTCTCGGGCTGCTCAGTAAAGGGTTGTCCAACCTGCAAATTGCCGAGATGCTGAGCATCAGCAACAAAACCGTCAGCAC
CCACAAGAAGAATATTTTGCGCAAGACTGGCGCCAGTAACCTGCTGGAGCTGGTGGCGGTGTTTAAAGAGCTGACGCCAT
GA

Upstream 100 bases:

>100_bases
ATAACGCTGTAAATCACCTTTGCCGCCTGCAGAATGAACGTCCTGATTAACAGTAGATTGTGCTGTTTCATCAGCAGAGC
ACAGTGGCTCCTTTTTGGTT

Downstream 100 bases:

>100_bases
TGCGTGGAGTCCTGTTGCTGTTAACCCTGCTGCTGAGCCTCGGCAACGTCACACAGGCAGCGCAGCCGGTAAGTTATCGG
TTGGTCAGCAACCTGAATAT

Product: two component LuxR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 213; Mature: 213

Protein sequence:

>213_residues
MLTARIRYSSQAMPSLLLVDDHPVVHVALEAALIKSSRSYVLQAVEDDVQALAQLAAADFALVILDIGLPQVDGLQLLKK
IRRHYPQQSILIYTAQEEEIYARMAYAAGANGFVHKGSRLEQLVLAIETVLAGELSFPAAAMAEETQPTEGSLLTPKELQ
ILGLLSKGLSNLQIAEMLSISNKTVSTHKKNILRKTGASNLLELVAVFKELTP

Sequences:

>Translated_213_residues
MLTARIRYSSQAMPSLLLVDDHPVVHVALEAALIKSSRSYVLQAVEDDVQALAQLAAADFALVILDIGLPQVDGLQLLKK
IRRHYPQQSILIYTAQEEEIYARMAYAAGANGFVHKGSRLEQLVLAIETVLAGELSFPAAAMAEETQPTEGSLLTPKELQ
ILGLLSKGLSNLQIAEMLSISNKTVSTHKKNILRKTGASNLLELVAVFKELTP
>Mature_213_residues
MLTARIRYSSQAMPSLLLVDDHPVVHVALEAALIKSSRSYVLQAVEDDVQALAQLAAADFALVILDIGLPQVDGLQLLKK
IRRHYPQQSILIYTAQEEEIYARMAYAAGANGFVHKGSRLEQLVLAIETVLAGELSFPAAAMAEETQPTEGSLLTPKELQ
ILGLLSKGLSNLQIAEMLSISNKTVSTHKKNILRKTGASNLLELVAVFKELTP

Specific function: Unknown

COG id: COG2197

COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1786747, Length=197, Percent_Identity=33.502538071066, Blast_Score=116, Evalue=1e-27,
Organism=Escherichia coli, GI1788712, Length=204, Percent_Identity=29.4117647058824, Blast_Score=98, Evalue=4e-22,
Organism=Escherichia coli, GI1788521, Length=195, Percent_Identity=31.2820512820513, Blast_Score=78, Evalue=5e-16,
Organism=Escherichia coli, GI1788222, Length=203, Percent_Identity=28.5714285714286, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1790102, Length=192, Percent_Identity=28.125, Blast_Score=72, Evalue=2e-14,
Organism=Escherichia coli, GI1788546, Length=205, Percent_Identity=26.3414634146341, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1787473, Length=189, Percent_Identity=28.5714285714286, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001789
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 23155; Mature: 23155

Theoretical pI: Translated: 6.36; Mature: 6.36

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTARIRYSSQAMPSLLLVDDHPVVHVALEAALIKSSRSYVLQAVEDDVQALAQLAAADF
CCEEEEECCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALVILDIGLPQVDGLQLLKKIRRHYPQQSILIYTAQEEEIYARMAYAAGANGFVHKGSRL
HEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHCCCCCCEECCHHH
EQLVLAIETVLAGELSFPAAAMAEETQPTEGSLLTPKELQILGLLSKGLSNLQIAEMLSI
HHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHH
SNKTVSTHKKNILRKTGASNLLELVAVFKELTP
CCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLTARIRYSSQAMPSLLLVDDHPVVHVALEAALIKSSRSYVLQAVEDDVQALAQLAAADF
CCEEEEECCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALVILDIGLPQVDGLQLLKKIRRHYPQQSILIYTAQEEEIYARMAYAAGANGFVHKGSRL
HEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHCCCCCCEECCHHH
EQLVLAIETVLAGELSFPAAAMAEETQPTEGSLLTPKELQILGLLSKGLSNLQIAEMLSI
HHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHH
SNKTVSTHKKNILRKTGASNLLELVAVFKELTP
CCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1360005; 11677609 [H]