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The map label for this gene is rimM

Identifier: 157369098

GI number: 157369098

Start: 950400

End: 950948

Strand: Direct

Name: rimM

Synonym: Spro_0853

Alternate gene names: 157369098

Gene position: 950400-950948 (Clockwise)

Preceding gene: 157369097

Following gene: 157369099

Centisome position: 17.44

GC content: 50.09

Gene sequence:

>549_bases
ATGAGCAAGCAACTCAAACCGGTAGCACCTAAGCAGCCGATTGTACTCGGTAAGATGGGGTCTACTTACGGCATCCGTGG
TTGGCTCAGAGTGTTTTCATCCACCGAGAACGCCGAAAGCATATTTGACTATCAGCCCTGGTTAATCCAGCGCTCTGGTC
AGTGGCAGTTTGTCGAGTTGGAAGACTGGAAACGCCACAGTCAGGATCTGATCATCAAGGTCAAAGGCATTGACGATCGG
GATGCTGCGAATCTACTGACCAATTGCGAAATTGTCGTAGATTCCGAGCAGTTGCCTCCGCTGGAAGGCGATGATTACTA
CTGGAAAGACCTTATGGGCTGCCAGGTAGTCACCACTTCCGGATACGAACTGGGTAAAGTCATCGATATGATGGAAACCG
GTTCTAACGACGTCATGGTCGTGCGGGCAAACCTGAAAGATGCATTCGGTATGAAGGAGCGGTTGGTCCCGTTTCTTCAT
GGGCAGGTTATCAAGAAAGTCGATCTCACTGCTCGCGTGATTGAAGCAGATTGGGATCCTGGTTTTTGA

Upstream 100 bases:

>100_bases
CATTGAGCACTGGGTTGGTCTGGGTGCTACCGTTTCTGATCGCGTTCACGCGCTGATCAAAGACGCTAAGAAAGCAGCTT
AATCTGTCGCGGTGGTGGCA

Downstream 100 bases:

>100_bases
CCTCCGAATTAAACGGTCGAAACAAGTGGAATGACAGTAAGGGGATTGGCTTGTGTTCATTGGTATTGTAAGCCTGTTTC
CTGAGATGTTCCGCGCGATC

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 182; Mature: 181

Protein sequence:

>182_residues
MSKQLKPVAPKQPIVLGKMGSTYGIRGWLRVFSSTENAESIFDYQPWLIQRSGQWQFVELEDWKRHSQDLIIKVKGIDDR
DAANLLTNCEIVVDSEQLPPLEGDDYYWKDLMGCQVVTTSGYELGKVIDMMETGSNDVMVVRANLKDAFGMKERLVPFLH
GQVIKKVDLTARVIEADWDPGF

Sequences:

>Translated_182_residues
MSKQLKPVAPKQPIVLGKMGSTYGIRGWLRVFSSTENAESIFDYQPWLIQRSGQWQFVELEDWKRHSQDLIIKVKGIDDR
DAANLLTNCEIVVDSEQLPPLEGDDYYWKDLMGCQVVTTSGYELGKVIDMMETGSNDVMVVRANLKDAFGMKERLVPFLH
GQVIKKVDLTARVIEADWDPGF
>Mature_181_residues
SKQLKPVAPKQPIVLGKMGSTYGIRGWLRVFSSTENAESIFDYQPWLIQRSGQWQFVELEDWKRHSQDLIIKVKGIDDRD
AANLLTNCEIVVDSEQLPPLEGDDYYWKDLMGCQVVTTSGYELGKVIDMMETGSNDVMVVRANLKDAFGMKERLVPFLHG
QVIKKVDLTARVIEADWDPGF

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

Organism=Escherichia coli, GI87082136, Length=182, Percent_Identity=81.8681318681319, Blast_Score=316, Evalue=5e-88,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_SERP5 (A8GA19)

Other databases:

- EMBL:   CP000826
- RefSeq:   YP_001477087.1
- ProteinModelPortal:   A8GA19
- SMR:   A8GA19
- STRING:   A8GA19
- GeneID:   5602495
- GenomeReviews:   CP000826_GR
- KEGG:   spe:Spro_0853
- eggNOG:   COG0806
- HOGENOM:   HBG703775
- OMA:   AYGIRGW
- ProtClustDB:   PRK00122
- BioCyc:   SPRO399741:SPRO_0853-MONOMER
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF05239 PRC; PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 20726; Mature: 20595

Theoretical pI: Translated: 4.75; Mature: 4.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKQLKPVAPKQPIVLGKMGSTYGIRGWLRVFSSTENAESIFDYQPWLIQRSGQWQFVEL
CCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCCHHHHCCCCEEEEECCCEEEEEH
EDWKRHSQDLIIKVKGIDDRDAANLLTNCEIVVDSEQLPPLEGDDYYWKDLMGCQVVTTS
HHHCCCCCEEEEEEECCCCCCHHHHHHCCEEEEECCCCCCCCCCCCHHHHCCCCEEEEEC
GYELGKVIDMMETGSNDVMVVRANLKDAFGMKERLVPFLHGQVIKKVDLTARVIEADWDP
CCCHHHHHHHHHCCCCCEEEEEECCCCHHCCHHHHHHHHHHHHHHHHCCEEEEEECCCCC
GF
CC
>Mature Secondary Structure 
SKQLKPVAPKQPIVLGKMGSTYGIRGWLRVFSSTENAESIFDYQPWLIQRSGQWQFVEL
CCCCCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCCHHHHCCCCEEEEECCCEEEEEH
EDWKRHSQDLIIKVKGIDDRDAANLLTNCEIVVDSEQLPPLEGDDYYWKDLMGCQVVTTS
HHHCCCCCEEEEEEECCCCCCHHHHHHCCEEEEECCCCCCCCCCCCHHHHCCCCEEEEEC
GYELGKVIDMMETGSNDVMVVRANLKDAFGMKERLVPFLHGQVIKKVDLTARVIEADWDP
CCCHHHHHHHHHCCCCCEEEEEECCCCHHCCHHHHHHHHHHHHHHHHCCEEEEEECCCCC
GF
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA