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The map label for this gene is nlpD [H]

Identifier: 157369076

GI number: 157369076

Start: 924401

End: 925387

Strand: Direct

Name: nlpD [H]

Synonym: Spro_0831

Alternate gene names: 157369076

Gene position: 924401-925387 (Clockwise)

Preceding gene: 157369075

Following gene: 157369077

Centisome position: 16.97

GC content: 53.09

Gene sequence:

>987_bases
ATGATTACATTACGCCGGGTTGCGGTGTGTACGATGGTAAGTTTGTGGTTGGCAGGTTGTACGAACACTGAATCGACATC
GGCCCCTATTAGTAGCGTGGACGGTGGCGGAGCCGCCGCATCCAGCAACGCTGGAGCGCAGGCTAACGCTGAAGGGCACA
TTGTTTACAACCGCAGTTACACTTCGATCCCCAAAGGGAGCTACAGCGGCAATACCTACACGGTTAAGCGCGGAGACACG
CTGTTTTACATCGCCTGGATCACCGGAAACGATTACCGTGACCTGGCCCAGCGCAACAATATCCCTGAGCCATACAGCCT
GAATGTGGGCCAAAGCATTCAGCTTGGTAATGGTTCCGCCAACGGAAACGGCGGTATGCTGGCGGCAACAGACGCGACCA
GCGGCGGTGTTCCTAAGCCACCATCGACCTCTCAGATACAAACTGCAACGGTTGATTCTCCATCAACTAACGCGTATTCT
GATAATTCGGGTAAACAGAATGTAGGTAAGATGTTACCTGCAGCAGGCGCAGTGGCGGCAACTACCGCAACAGCCCCTGT
TACCGCACCGGTCGTTGCTCCCCCAGTGAGCAGCACCGTCAGCAACAGCGCCCCAGTAAGTACCTGGAGATGGCCGACTG
ACGGTAAGATTATTGATAACTTTTCCTCATCAGAAGGTGGGAATAAAGGTGTCGATATCGCCGGGACTCGTGGGCAGCCT
ATCTTCGCTACCGCCGATGGTCGTGTAGTGTACGCAGGCAACGCTTTACGGGGTTACGGTAATCTAATCATCATCAAACA
CAATGATGATTACCTGAGCGCCTACGCTCACAACGACACAATGCTGGTCCGGGAACAACAAGAAGTGAAGGCGGGTCAAA
AAATAGCCACCATGGGTAGCACCGGAACCAGTTCAGTACGTTTGCATTTTGAAATTCGTTACAAGGGGAAATCCGTAAAC
CCGCTGCGTTATCTTCCGCAGCGATAG

Upstream 100 bases:

>100_bases
GAAATCGAGAGAATGTTAAAAGCTCAGCTACCATGTAAAGGGTATTTGGATATATCGCTGATATTGCTGTCATGGGGGAA
GCATGAGCACGGGAAGCCCA

Downstream 100 bases:

>100_bases
ATTGGGCAGAATACGCTGTATTCTGCTCGCGGTATCACGGGTAGGAGCAGCATATGAGCCAAAATACGCTGAAAGTTAAC
GAGTTACATGACGATGCGGA

Product: lipoprotein NlpD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 328; Mature: 328

Protein sequence:

>328_residues
MITLRRVAVCTMVSLWLAGCTNTESTSAPISSVDGGGAAASSNAGAQANAEGHIVYNRSYTSIPKGSYSGNTYTVKRGDT
LFYIAWITGNDYRDLAQRNNIPEPYSLNVGQSIQLGNGSANGNGGMLAATDATSGGVPKPPSTSQIQTATVDSPSTNAYS
DNSGKQNVGKMLPAAGAVAATTATAPVTAPVVAPPVSSTVSNSAPVSTWRWPTDGKIIDNFSSSEGGNKGVDIAGTRGQP
IFATADGRVVYAGNALRGYGNLIIIKHNDDYLSAYAHNDTMLVREQQEVKAGQKIATMGSTGTSSVRLHFEIRYKGKSVN
PLRYLPQR

Sequences:

>Translated_328_residues
MITLRRVAVCTMVSLWLAGCTNTESTSAPISSVDGGGAAASSNAGAQANAEGHIVYNRSYTSIPKGSYSGNTYTVKRGDT
LFYIAWITGNDYRDLAQRNNIPEPYSLNVGQSIQLGNGSANGNGGMLAATDATSGGVPKPPSTSQIQTATVDSPSTNAYS
DNSGKQNVGKMLPAAGAVAATTATAPVTAPVVAPPVSSTVSNSAPVSTWRWPTDGKIIDNFSSSEGGNKGVDIAGTRGQP
IFATADGRVVYAGNALRGYGNLIIIKHNDDYLSAYAHNDTMLVREQQEVKAGQKIATMGSTGTSSVRLHFEIRYKGKSVN
PLRYLPQR
>Mature_328_residues
MITLRRVAVCTMVSLWLAGCTNTESTSAPISSVDGGGAAASSNAGAQANAEGHIVYNRSYTSIPKGSYSGNTYTVKRGDT
LFYIAWITGNDYRDLAQRNNIPEPYSLNVGQSIQLGNGSANGNGGMLAATDATSGGVPKPPSTSQIQTATVDSPSTNAYS
DNSGKQNVGKMLPAAGAVAATTATAPVTAPVVAPPVSSTVSNSAPVSTWRWPTDGKIIDNFSSSEGGNKGVDIAGTRGQP
IFATADGRVVYAGNALRGYGNLIIIKHNDDYLSAYAHNDTMLVREQQEVKAGQKIATMGSTGTSSVRLHFEIRYKGKSVN
PLRYLPQR

Specific function: May be involved in stationary-phase survival [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell inner membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1789099, Length=376, Percent_Identity=57.9787234042553, Blast_Score=380, Evalue=1e-107,
Organism=Escherichia coli, GI87082174, Length=263, Percent_Identity=46.3878326996198, Blast_Score=216, Evalue=2e-57,
Organism=Escherichia coli, GI87082297, Length=122, Percent_Identity=36.8852459016393, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI87081989, Length=96, Percent_Identity=37.5, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 34230; Mature: 34230

Theoretical pI: Translated: 9.49; Mature: 9.49

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITLRRVAVCTMVSLWLAGCTNTESTSAPISSVDGGGAAASSNAGAQANAEGHIVYNRSY
CEEHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCC
TSIPKGSYSGNTYTVKRGDTLFYIAWITGNDYRDLAQRNNIPEPYSLNVGQSIQLGNGSA
CCCCCCCCCCCEEEEECCCEEEEEEEEECCCHHHHHHHCCCCCCEEECCCCEEEECCCCC
NGNGGMLAATDATSGGVPKPPSTSQIQTATVDSPSTNAYSDNSGKQNVGKMLPAAGAVAA
CCCCCEEEEECCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHCCCCCCEEE
TTATAPVTAPVVAPPVSSTVSNSAPVSTWRWPTDGKIIDNFSSSEGGNKGVDIAGTRGQP
ECCCCCCCCCEECCCCCHHCCCCCCCCEEECCCCCEEEECCCCCCCCCCCEEEECCCCCE
IFATADGRVVYAGNALRGYGNLIIIKHNDDYLSAYAHNDTMLVREQQEVKAGQKIATMGS
EEEECCCEEEEECCCCCCCCCEEEEEECCCEEEEEECCCEEEEECHHHHHCCCEEEEECC
TGTSSVRLHFEIRYKGKSVNPLRYLPQR
CCCCEEEEEEEEEECCCCCCHHHCCCCC
>Mature Secondary Structure
MITLRRVAVCTMVSLWLAGCTNTESTSAPISSVDGGGAAASSNAGAQANAEGHIVYNRSY
CEEHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCC
TSIPKGSYSGNTYTVKRGDTLFYIAWITGNDYRDLAQRNNIPEPYSLNVGQSIQLGNGSA
CCCCCCCCCCCEEEEECCCEEEEEEEEECCCHHHHHHHCCCCCCEEECCCCEEEECCCCC
NGNGGMLAATDATSGGVPKPPSTSQIQTATVDSPSTNAYSDNSGKQNVGKMLPAAGAVAA
CCCCCEEEEECCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHCCCCCCEEE
TTATAPVTAPVVAPPVSSTVSNSAPVSTWRWPTDGKIIDNFSSSEGGNKGVDIAGTRGQP
ECCCCCCCCCEECCCCCHHCCCCCCCCEEECCCCCEEEECCCCCCCCCCCEEEECCCCCE
IFATADGRVVYAGNALRGYGNLIIIKHNDDYLSAYAHNDTMLVREQQEVKAGQKIATMGS
EEEECCCEEEEECCCCCCCCCEEEEEECCCEEEEEECCCEEEEECHHHHHCCCEEEEECC
TGTSSVRLHFEIRYKGKSVNPLRYLPQR
CCCCEEEEEEEEEECCCCCCHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9973354 [H]