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The map label for this gene is yncD [H]

Identifier: 157368847

GI number: 157368847

Start: 666376

End: 668619

Strand: Direct

Name: yncD [H]

Synonym: Spro_0602

Alternate gene names: 157368847

Gene position: 666376-668619 (Clockwise)

Preceding gene: 157368846

Following gene: 157368848

Centisome position: 12.23

GC content: 56.51

Gene sequence:

>2244_bases
ATGAAATCTTTCAATCGATCTGGGCTTTATCTGGCGGTGATGTCGGTGATATTGCCGGGGGCGGCGCTGGCGGCGGACTC
GACCGACGTCGGTACCATCAGCGTAAAAGGGCAGTCGCTGGGCGGCGGCATGATGGTGCAGGACGATAGCGCCAAAGGGC
GTTCGACCGTCACCAAAGAGGCGATGGATAAAATGCCGGCGGCGGCCAACGCCATCGACAAACTGAAATATACCCCAGGC
CTGAACGTCAACAGCAACGACGCCAGCGGCCTGAGCGGCGTCGATTACACCATGCGCGGTATGAACTCCGATCAAATCGG
CCTGTCGATGGACGGCATTCCGATTAACGATTCCGGCAACTACGCGGTTTACCCAAACCTGCTGGGCGACTCGGAAAACC
TGGAGGAGGTGTTCGTCACCCAGGGGTCGTCTGAGGTGGATGGCCCGCATATCGGTTCCAGCGGCGGCAACATTGGTATG
GTGACGCGCCGTCCGGCGAAAGATTTCGGTGGCTTCGTCAAACAGACGCTGGGCAGCAACAACCTGAGCAAAACCTTCGC
CCGTCTGGAGACCGGTGAGTACAACGGCTTCAGCAACTGGATTTCCTACTCGCACACCGAGGCGAAAAAGTGGCGCGGAG
AAGGGCGCGAGTACTCCAACAAGTTCGAAATGAACTCGTTGTATGAGGACGGCAACGGCAACAGCAGTAACCTGATCATG
AAGTACAACCAGCAGAATAACGTCAACTACAACACCCTGAGCAAGGCGCAGTTTGAAAATGACGGCCGTTATACCGACTA
CGCCACCACGCCGGAGTACAACAGCAAGGGCCAGTTGAACAAGTACTACAAACTCAACCGCAACCCGTTTGACACCTTCA
CGTTGTCGTTCACCCAGAAGCTGCAACTGCGCGACAACCTGGCGTTGACTCTGCAACCCTATTACTACTGGGGTAATGGC
GGCAGCTTCACCGGCCAGACCGCTTCGGTGTTGTCCAATACTTCGGATAAGGCCGGTCAGTACGATCTGAGCAATTTGCA
GTCCAACACCTATTACCGCCCTTCCTGGACGCAAACCTGGCGGCCGGGCATTACCACCAAGTTGAAGTGGGACATCAACG
ATCAGCACAGCCTGGATATCGGCTACTGGTATGAACGTGCGCGCCAGTCGCAGACCCAGCCGTTTATCGGCATCAAGGAC
GACGGTAACCCGGAGCAACTCTCTGGCAAACCGGGCGGCAGCGATCAGGTGAAGGACGCCAATGGCAAAACCGTGCAGGG
GCGCAACCAATACACCATCACCCCGGCGCAAAAAGTCTGGCTGCAGGACACATGGTTCGCCACGCCGGACTGGACCTTTG
TCGGCGGGCTGGCTTATCAGTACGTTGAGCGAAAAGGGGATAACAAGGGCAGCCTGTACAATGTGCCGGAAAAGCGCGAT
GCCAAATACCATGAATTCCTGCCGAATTTCAGCGCCAGCTACAAGCTGAACCAGGAAAACCAGGTGTTCTACAACCTGAC
GCGCAACATGCGTACTCCGCCGAACTACGTGCTGTACAACGTGGGCGACTCGCTTAGTACCAAGCCGGAACTGAGCTGGA
ACCACGAGCTGGGCTGGCGTTTCCAGCAGGAAAATATGCTGATGAGTGCCACGCTGTTCTATATGCGCTACAGCGATCGT
CAAATCTCCACCACCAACTCGTCCGGCGATTACGAGATGATGAACATCGGTAATGTGGAGAACAAAGGGCTGGAGCTGGA
GTGGAGCGGCCAGTTGCCGCATAACTTCAACTACTACACCTCGTACACTTACACCCAGTCCAGGCAGAAGAGCGACATTG
TCAGCAACGGCGGCCAGCCGCTGCCGACCAGTGGCAAAGAGGTGCCGAACGTGCCGAAAAACCTGCTTAACATGACGTTG
GGCTATGACGATGGCCTGTATTACAGCAGCGTCAGCGGCAAATACGTCAGTTCGTTCTACGGCGACCTGACTAACGACGA
GAAGATCGGCGGCCGCACGGTGTTCGATCTGGCGGCGGGGGTGCATCTGCCGGTAGACAAGAAGATCGTCAAGAGCGCGG
CGTTGCGCTTTGGTATCAGCAACCTGTTCGACAAGGAGTACCTGACATCGGTGCGCACCACCACCTTCAACGCAGCGCCG
TATGGCGGCGTGAAGGCCAGTACGCCGTACTACAACGTCGGGGAAGAACGTACCTTCAGCGTATCGCTGGAAGCCACCTT
TTAA

Upstream 100 bases:

>100_bases
GGCTTTCAACGGGCAAACAACAAAACGATTTTCAGCCACGTTCAATTATCAGGCGCCTTGACGCCTGGCATAACAGTTTG
ATTTTTATGGGAAGGGAACA

Downstream 100 bases:

>100_bases
CCAATCCGAGATCTGAATGATGAATGCCAATTTAATGCACGACATTATTTTCTACGTGATGTACGCCGCACTGGCGATTG
CGCTGGTGATCATTATCGAA

Product: TonB-dependent receptor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 747; Mature: 747

Protein sequence:

>747_residues
MKSFNRSGLYLAVMSVILPGAALAADSTDVGTISVKGQSLGGGMMVQDDSAKGRSTVTKEAMDKMPAAANAIDKLKYTPG
LNVNSNDASGLSGVDYTMRGMNSDQIGLSMDGIPINDSGNYAVYPNLLGDSENLEEVFVTQGSSEVDGPHIGSSGGNIGM
VTRRPAKDFGGFVKQTLGSNNLSKTFARLETGEYNGFSNWISYSHTEAKKWRGEGREYSNKFEMNSLYEDGNGNSSNLIM
KYNQQNNVNYNTLSKAQFENDGRYTDYATTPEYNSKGQLNKYYKLNRNPFDTFTLSFTQKLQLRDNLALTLQPYYYWGNG
GSFTGQTASVLSNTSDKAGQYDLSNLQSNTYYRPSWTQTWRPGITTKLKWDINDQHSLDIGYWYERARQSQTQPFIGIKD
DGNPEQLSGKPGGSDQVKDANGKTVQGRNQYTITPAQKVWLQDTWFATPDWTFVGGLAYQYVERKGDNKGSLYNVPEKRD
AKYHEFLPNFSASYKLNQENQVFYNLTRNMRTPPNYVLYNVGDSLSTKPELSWNHELGWRFQQENMLMSATLFYMRYSDR
QISTTNSSGDYEMMNIGNVENKGLELEWSGQLPHNFNYYTSYTYTQSRQKSDIVSNGGQPLPTSGKEVPNVPKNLLNMTL
GYDDGLYYSSVSGKYVSSFYGDLTNDEKIGGRTVFDLAAGVHLPVDKKIVKSAALRFGISNLFDKEYLTSVRTTTFNAAP
YGGVKASTPYYNVGEERTFSVSLEATF

Sequences:

>Translated_747_residues
MKSFNRSGLYLAVMSVILPGAALAADSTDVGTISVKGQSLGGGMMVQDDSAKGRSTVTKEAMDKMPAAANAIDKLKYTPG
LNVNSNDASGLSGVDYTMRGMNSDQIGLSMDGIPINDSGNYAVYPNLLGDSENLEEVFVTQGSSEVDGPHIGSSGGNIGM
VTRRPAKDFGGFVKQTLGSNNLSKTFARLETGEYNGFSNWISYSHTEAKKWRGEGREYSNKFEMNSLYEDGNGNSSNLIM
KYNQQNNVNYNTLSKAQFENDGRYTDYATTPEYNSKGQLNKYYKLNRNPFDTFTLSFTQKLQLRDNLALTLQPYYYWGNG
GSFTGQTASVLSNTSDKAGQYDLSNLQSNTYYRPSWTQTWRPGITTKLKWDINDQHSLDIGYWYERARQSQTQPFIGIKD
DGNPEQLSGKPGGSDQVKDANGKTVQGRNQYTITPAQKVWLQDTWFATPDWTFVGGLAYQYVERKGDNKGSLYNVPEKRD
AKYHEFLPNFSASYKLNQENQVFYNLTRNMRTPPNYVLYNVGDSLSTKPELSWNHELGWRFQQENMLMSATLFYMRYSDR
QISTTNSSGDYEMMNIGNVENKGLELEWSGQLPHNFNYYTSYTYTQSRQKSDIVSNGGQPLPTSGKEVPNVPKNLLNMTL
GYDDGLYYSSVSGKYVSSFYGDLTNDEKIGGRTVFDLAAGVHLPVDKKIVKSAALRFGISNLFDKEYLTSVRTTTFNAAP
YGGVKASTPYYNVGEERTFSVSLEATF
>Mature_747_residues
MKSFNRSGLYLAVMSVILPGAALAADSTDVGTISVKGQSLGGGMMVQDDSAKGRSTVTKEAMDKMPAAANAIDKLKYTPG
LNVNSNDASGLSGVDYTMRGMNSDQIGLSMDGIPINDSGNYAVYPNLLGDSENLEEVFVTQGSSEVDGPHIGSSGGNIGM
VTRRPAKDFGGFVKQTLGSNNLSKTFARLETGEYNGFSNWISYSHTEAKKWRGEGREYSNKFEMNSLYEDGNGNSSNLIM
KYNQQNNVNYNTLSKAQFENDGRYTDYATTPEYNSKGQLNKYYKLNRNPFDTFTLSFTQKLQLRDNLALTLQPYYYWGNG
GSFTGQTASVLSNTSDKAGQYDLSNLQSNTYYRPSWTQTWRPGITTKLKWDINDQHSLDIGYWYERARQSQTQPFIGIKD
DGNPEQLSGKPGGSDQVKDANGKTVQGRNQYTITPAQKVWLQDTWFATPDWTFVGGLAYQYVERKGDNKGSLYNVPEKRD
AKYHEFLPNFSASYKLNQENQVFYNLTRNMRTPPNYVLYNVGDSLSTKPELSWNHELGWRFQQENMLMSATLFYMRYSDR
QISTTNSSGDYEMMNIGNVENKGLELEWSGQLPHNFNYYTSYTYTQSRQKSDIVSNGGQPLPTSGKEVPNVPKNLLNMTL
GYDDGLYYSSVSGKYVSSFYGDLTNDEKIGGRTVFDLAAGVHLPVDKKIVKSAALRFGISNLFDKEYLTSVRTTTFNAAP
YGGVKASTPYYNVGEERTFSVSLEATF

Specific function: Probable receptor, tonB-dependent [H]

COG id: COG1629

COG function: function code P; Outer membrane receptor proteins, mostly Fe transport

Gene ontology:

Cell location: Cell outer membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tonB-dependent receptor family [H]

Homologues:

Organism=Escherichia coli, GI1787723, Length=281, Percent_Identity=25.2669039145907, Blast_Score=74, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012910
- InterPro:   IPR000531 [H]

Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]

EC number: NA

Molecular weight: Translated: 83429; Mature: 83429

Theoretical pI: Translated: 6.44; Mature: 6.44

Prosite motif: PS01156 TONB_DEPENDENT_REC_2 ; PS00283 SOYBEAN_KUNITZ

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSFNRSGLYLAVMSVILPGAALAADSTDVGTISVKGQSLGGGMMVQDDSAKGRSTVTKE
CCCCCCCCHHHHHHHHHHCCCCEECCCCCCEEEEEECCCCCCCEEEECCCCCCCHHHHHH
AMDKMPAAANAIDKLKYTPGLNVNSNDASGLSGVDYTMRGMNSDQIGLSMDGIPINDSGN
HHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCEEECCEEECCCCC
YAVYPNLLGDSENLEEVFVTQGSSEVDGPHIGSSGGNIGMVTRRPAKDFGGFVKQTLGSN
EEEECCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCC
NLSKTFARLETGEYNGFSNWISYSHTEAKKWRGEGREYSNKFEMNSLYEDGNGNSSNLIM
CHHHHHHHHHCCCCCCHHHHHHCCCHHHHHHHCCCCCCCCEECCHHHEECCCCCCCCEEE
KYNQQNNVNYNTLSKAQFENDGRYTDYATTPEYNSKGQLNKYYKLNRNPFDTFTLSFTQK
EECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEEEEE
LQLRDNLALTLQPYYYWGNGGSFTGQTASVLSNTSDKAGQYDLSNLQSNTYYRPSWTQTW
EEECCCEEEEEEEEEEECCCCCCCCCHHHHHCCCCCCCCCCCHHHCCCCCEECCCCCCCC
RPGITTKLKWDINDQHSLDIGYWYERARQSQTQPFIGIKDDGNPEQLSGKPGGSDQVKDA
CCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCHHHCCCCCCCCCCCCCC
NGKTVQGRNQYTITPAQKVWLQDTWFATPDWTFVGGLAYQYVERKGDNKGSLYNVPEKRD
CCCEEECCCCEEECHHHHEEEEECEECCCCCEEHHHHHHHHHHHCCCCCCCEECCCCCCC
AKYHEFLPNFSASYKLNQENQVFYNLTRNMRTPPNYVLYNVGDSLSTKPELSWNHELGWR
CHHHHHCCCCCCEEEECCCCEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCE
FQQENMLMSATLFYMRYSDRQISTTNSSGDYEMMNIGNVENKGLELEWSGQLPHNFNYYT
ECCCCEEEEEEEEEEEECCCEEEECCCCCCEEEEECCCCCCCCEEEEECCCCCCCCCEEE
SYTYTQSRQKSDIVSNGGQPLPTSGKEVPNVPKNLLNMTLGYDDGLYYSSVSGKYVSSFY
EEEEECCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHEEECCCCCEEEECCCCHHHHHHH
GDLTNDEKIGGRTVFDLAAGVHLPVDKKIVKSAALRFGISNLFDKEYLTSVRTTTFNAAP
CCCCCCCCCCCEEEEHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCC
YGGVKASTPYYNVGEERTFSVSLEATF
CCCCCCCCCCEECCCCEEEEEEEEEEC
>Mature Secondary Structure
MKSFNRSGLYLAVMSVILPGAALAADSTDVGTISVKGQSLGGGMMVQDDSAKGRSTVTKE
CCCCCCCCHHHHHHHHHHCCCCEECCCCCCEEEEEECCCCCCCEEEECCCCCCCHHHHHH
AMDKMPAAANAIDKLKYTPGLNVNSNDASGLSGVDYTMRGMNSDQIGLSMDGIPINDSGN
HHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCEEECCEEECCCCC
YAVYPNLLGDSENLEEVFVTQGSSEVDGPHIGSSGGNIGMVTRRPAKDFGGFVKQTLGSN
EEEECCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCC
NLSKTFARLETGEYNGFSNWISYSHTEAKKWRGEGREYSNKFEMNSLYEDGNGNSSNLIM
CHHHHHHHHHCCCCCCHHHHHHCCCHHHHHHHCCCCCCCCEECCHHHEECCCCCCCCEEE
KYNQQNNVNYNTLSKAQFENDGRYTDYATTPEYNSKGQLNKYYKLNRNPFDTFTLSFTQK
EECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEEEEE
LQLRDNLALTLQPYYYWGNGGSFTGQTASVLSNTSDKAGQYDLSNLQSNTYYRPSWTQTW
EEECCCEEEEEEEEEEECCCCCCCCCHHHHHCCCCCCCCCCCHHHCCCCCEECCCCCCCC
RPGITTKLKWDINDQHSLDIGYWYERARQSQTQPFIGIKDDGNPEQLSGKPGGSDQVKDA
CCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCHHHCCCCCCCCCCCCCC
NGKTVQGRNQYTITPAQKVWLQDTWFATPDWTFVGGLAYQYVERKGDNKGSLYNVPEKRD
CCCEEECCCCEEECHHHHEEEEECEECCCCCEEHHHHHHHHHHHCCCCCCCEECCCCCCC
AKYHEFLPNFSASYKLNQENQVFYNLTRNMRTPPNYVLYNVGDSLSTKPELSWNHELGWR
CHHHHHCCCCCCEEEECCCCEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCE
FQQENMLMSATLFYMRYSDRQISTTNSSGDYEMMNIGNVENKGLELEWSGQLPHNFNYYT
ECCCCEEEEEEEEEEEECCCEEEECCCCCCEEEEECCCCCCCCEEEEECCCCCCCCCEEE
SYTYTQSRQKSDIVSNGGQPLPTSGKEVPNVPKNLLNMTLGYDDGLYYSSVSGKYVSSFY
EEEEECCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHEEECCCCCEEEECCCCHHHHHHH
GDLTNDEKIGGRTVFDLAAGVHLPVDKKIVKSAALRFGISNLFDKEYLTSVRTTTFNAAP
CCCCCCCCCCCEEEEHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCC
YGGVKASTPYYNVGEERTFSVSLEATF
CCCCCCCCCCEECCCCEEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]