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The map label for this gene is yjdC [H]

Identifier: 157368649

GI number: 157368649

Start: 451519

End: 452109

Strand: Reverse

Name: yjdC [H]

Synonym: Spro_0402

Alternate gene names: 157368649

Gene position: 452109-451519 (Counterclockwise)

Preceding gene: 157368650

Following gene: 157368645

Centisome position: 8.3

GC content: 55.16

Gene sequence:

>591_bases
TTGGAGGAAGCACAAGTGCAACGTGAACACGTCCTTGATACGGCACTGGGGCTGTTGGAACAACAGGGCCTGGCGACCAC
CACACTGGAAATGCTGGCGGATAAACTCGATGTGCAGCCGGGCGACCTGAAACGGTTCTGGCCGGATCGTGAAGCGCTGC
TATATGACTGCCTGCGCTATCATGGTCAGCAAATTGACACCTGGCGTCGCCAGTTGCTGCTGGACGAGACTCTAAGCCCA
CAGCAAAAACTGTTGGCGCGCTATGACGTTTTGGCAGAGTACGTCAAACACGACCGCTATCCCGGCTGTTTGTTTATCGC
TGCCTGCAGCTTTTTCCCGGAGGTGGATCACCCTATCCACCAATTGGCAGAGCAACAGAAGCTGACATCGCTGGATCTGA
CCCGCGATTTGCTGCGTGAAATGGATGCCGATGACGCCGATATGGTGGCACAACAGATGGAGCTGATTCAGGAAGGTTGC
CTGAGCAAACTGCTGATAAAACGCCAGCTACAGGACGTTTCCGTGGCCAAGCGGCTGGCGGAAGACATCTTGCAGGTAGC
TCAGTGCCGCAGAAACGGGGCGTTAAGTTAA

Upstream 100 bases:

>100_bases
TCAACCAGCCAACGGGTTACCGGATTTATGGATGCCGCGGCATTCAACGCGCATTTGCAGAAAACGGTGCAATAAATAAC
ACTGAGGATCGGAACCGAAT

Downstream 100 bases:

>100_bases
TTCAGTGTGCGGCGGTGCACCGCCGCCGCAGAATTTTGGCCAATCCGGCGCAATTTTTGCGCCCTTTGACCGAAAAGCCA
GCAACCAGACGCGTTTTACC

Product: putative transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 196; Mature: 196

Protein sequence:

>196_residues
MEEAQVQREHVLDTALGLLEQQGLATTTLEMLADKLDVQPGDLKRFWPDREALLYDCLRYHGQQIDTWRRQLLLDETLSP
QQKLLARYDVLAEYVKHDRYPGCLFIAACSFFPEVDHPIHQLAEQQKLTSLDLTRDLLREMDADDADMVAQQMELIQEGC
LSKLLIKRQLQDVSVAKRLAEDILQVAQCRRNGALS

Sequences:

>Translated_196_residues
MEEAQVQREHVLDTALGLLEQQGLATTTLEMLADKLDVQPGDLKRFWPDREALLYDCLRYHGQQIDTWRRQLLLDETLSP
QQKLLARYDVLAEYVKHDRYPGCLFIAACSFFPEVDHPIHQLAEQQKLTSLDLTRDLLREMDADDADMVAQQMELIQEGC
LSKLLIKRQLQDVSVAKRLAEDILQVAQCRRNGALS
>Mature_196_residues
MEEAQVQREHVLDTALGLLEQQGLATTTLEMLADKLDVQPGDLKRFWPDREALLYDCLRYHGQQIDTWRRQLLLDETLSP
QQKLLARYDVLAEYVKHDRYPGCLFIAACSFFPEVDHPIHQLAEQQKLTSLDLTRDLLREMDADDADMVAQQMELIQEGC
LSKLLIKRQLQDVSVAKRLAEDILQVAQCRRNGALS

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082374, Length=191, Percent_Identity=61.2565445026178, Blast_Score=244, Evalue=2e-66,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 22575; Mature: 22575

Theoretical pI: Translated: 4.65; Mature: 4.65

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEEAQVQREHVLDTALGLLEQQGLATTTLEMLADKLDVQPGDLKRFWPDREALLYDCLRY
CCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHHH
HGQQIDTWRRQLLLDETLSPQQKLLARYDVLAEYVKHDRYPGCLFIAACSFFPEVDHPIH
CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHH
QLAEQQKLTSLDLTRDLLREMDADDADMVAQQMELIQEGCLSKLLIKRQLQDVSVAKRLA
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EDILQVAQCRRNGALS
HHHHHHHHHHHCCCCC
>Mature Secondary Structure
MEEAQVQREHVLDTALGLLEQQGLATTTLEMLADKLDVQPGDLKRFWPDREALLYDCLRY
CCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHHH
HGQQIDTWRRQLLLDETLSPQQKLLARYDVLAEYVKHDRYPGCLFIAACSFFPEVDHPIH
CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHH
QLAEQQKLTSLDLTRDLLREMDADDADMVAQQMELIQEGCLSKLLIKRQLQDVSVAKRLA
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EDILQVAQCRRNGALS
HHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]