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The map label for this gene is yibH [H]

Identifier: 157368364

GI number: 157368364

Start: 124923

End: 126059

Strand: Direct

Name: yibH [H]

Synonym: Spro_0115

Alternate gene names: 157368364

Gene position: 124923-126059 (Clockwise)

Preceding gene: 157368363

Following gene: 157368365

Centisome position: 2.29

GC content: 50.04

Gene sequence:

>1137_bases
ATGGATCTGCTCATTATCCTGACTTATGTCGCTTTTGCCTGGTCCATATTTAAGATTTTCAAAATACCGGTCAATAAATG
GACCGTGCCCACGGCTGCATTAGGTGGGGTGTTTTTAATTGGGGCGTTAATTCTGCTAATGAATTATAACCACCCCTATA
CTTATTTGGCGCAGAAAGCGGTTATTTCAATTCCTATTACGCCACAGGTGACGGGCGTAGTTAGCGAAGTAACTGAGAAG
CAAAACGTATTAATAAAAAAAGGTGAAGTGCTGTTTAAATTAGATCCCGCACGCTATCAGGCTCGGGTCAATCGACTTCA
GGCTGATTTGGTCACCGAGATTAATAATACTCAGGTGCTTAAAGGGCAGCTCGACGAAGCGATTGCCAACACATCTCGGG
TTAGTGCAGAGCGCGACCGGTTATATAAAGACTATCAGCGTTATGTTCGAGGCAGCCAGGCCAAGGTCAATCCATTTTCG
GAAAGCGATATTGATAACGCCCGGCAGAACTATCTGGCACAAGATGCGCTGGTAAAAGGTTCCGTGGCGGAGCAAGCGCA
AATCAAAAGTCAGTTAGACAGTGTGATTAACGGGGAACAGTCTCAAATCGTTAGCCTCAGGGCGCAGTTGGCAGAGGCCA
AATATAATCTTGATCAAACGGTGATACGCGCTCCCAGCGACGGTTACGTGACCCAGGTGCTGATCCGCCCAGGGACCTAC
GCCGCGGCAATTCCGCTGCGGCCGGTGATGGTGTTTATTCCTGAGCAAAAACGGCAAATCATTGCTCAGTTCCGCCAAAA
CTCGTTGCTGCGTCTTAAGGCCGGCGACGAAGCCGAAGTGGTGTTTAATGCATTTCCCGGCCAGGTATTCCCCGGTAAAT
TGATCAGAATTCTGCCGGTAGTCCCCGGCGGGTCTTACCAGGCGCAAGGGACGCTACAATCGCTGAGTGTGGCTGCCGGC
AGTGATGGTGTGCTGGCGGTGATTGAGCTGGCACCCAACAGTGAAATCGATGAATTACCTGACGGCATTTTTTCGCAGGT
GGCGGTTTACTCCGACCACTTTACCCACGTGGCGGTCATGCGCAAGGTACTGCTACGCATGACCAGTTGGATGCACTATC
TCTATCTGGACCATTAG

Upstream 100 bases:

>100_bases
TGCAAGGTCAGGAGGCGTCGTTCGCACAGTTGCAGCAACGTGTGGCGGAGCTGGAGTTGAAACTGGCGGGTAATAAAACG
CCGCCTTCGGAGTAGCCACC

Downstream 100 bases:

>100_bases
CGCAGTATAAAAAATCCGCTTCCTGAGGAGGAAATGCCGGTCACTTAAGGTGATATTGTTCCCTCTCCCTTGGGAGAGGG
AGACGCTCACTTAAACAACG

Product: secretion protein HlyD family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 378; Mature: 378

Protein sequence:

>378_residues
MDLLIILTYVAFAWSIFKIFKIPVNKWTVPTAALGGVFLIGALILLMNYNHPYTYLAQKAVISIPITPQVTGVVSEVTEK
QNVLIKKGEVLFKLDPARYQARVNRLQADLVTEINNTQVLKGQLDEAIANTSRVSAERDRLYKDYQRYVRGSQAKVNPFS
ESDIDNARQNYLAQDALVKGSVAEQAQIKSQLDSVINGEQSQIVSLRAQLAEAKYNLDQTVIRAPSDGYVTQVLIRPGTY
AAAIPLRPVMVFIPEQKRQIIAQFRQNSLLRLKAGDEAEVVFNAFPGQVFPGKLIRILPVVPGGSYQAQGTLQSLSVAAG
SDGVLAVIELAPNSEIDELPDGIFSQVAVYSDHFTHVAVMRKVLLRMTSWMHYLYLDH

Sequences:

>Translated_378_residues
MDLLIILTYVAFAWSIFKIFKIPVNKWTVPTAALGGVFLIGALILLMNYNHPYTYLAQKAVISIPITPQVTGVVSEVTEK
QNVLIKKGEVLFKLDPARYQARVNRLQADLVTEINNTQVLKGQLDEAIANTSRVSAERDRLYKDYQRYVRGSQAKVNPFS
ESDIDNARQNYLAQDALVKGSVAEQAQIKSQLDSVINGEQSQIVSLRAQLAEAKYNLDQTVIRAPSDGYVTQVLIRPGTY
AAAIPLRPVMVFIPEQKRQIIAQFRQNSLLRLKAGDEAEVVFNAFPGQVFPGKLIRILPVVPGGSYQAQGTLQSLSVAAG
SDGVLAVIELAPNSEIDELPDGIFSQVAVYSDHFTHVAVMRKVLLRMTSWMHYLYLDH
>Mature_378_residues
MDLLIILTYVAFAWSIFKIFKIPVNKWTVPTAALGGVFLIGALILLMNYNHPYTYLAQKAVISIPITPQVTGVVSEVTEK
QNVLIKKGEVLFKLDPARYQARVNRLQADLVTEINNTQVLKGQLDEAIANTSRVSAERDRLYKDYQRYVRGSQAKVNPFS
ESDIDNARQNYLAQDALVKGSVAEQAQIKSQLDSVINGEQSQIVSLRAQLAEAKYNLDQTVIRAPSDGYVTQVLIRPGTY
AAAIPLRPVMVFIPEQKRQIIAQFRQNSLLRLKAGDEAEVVFNAFPGQVFPGKLIRILPVVPGGSYQAQGTLQSLSVAAG
SDGVLAVIELAPNSEIDELPDGIFSQVAVYSDHFTHVAVMRKVLLRMTSWMHYLYLDH

Specific function: Unknown

COG id: COG1566

COG function: function code V; Multidrug resistance efflux pump

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family [H]

Homologues:

Organism=Escherichia coli, GI1790024, Length=378, Percent_Identity=80.9523809523809, Blast_Score=648, Evalue=0.0,
Organism=Escherichia coli, GI1790012, Length=378, Percent_Identity=74.6031746031746, Blast_Score=602, Evalue=1e-173,
Organism=Escherichia coli, GI1790519, Length=251, Percent_Identity=26.6932270916335, Blast_Score=83, Evalue=3e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006143 [H]

Pfam domain/function: PF00529 HlyD [H]

EC number: NA

Molecular weight: Translated: 41987; Mature: 41987

Theoretical pI: Translated: 9.19; Mature: 9.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLLIILTYVAFAWSIFKIFKIPVNKWTVPTAALGGVFLIGALILLMNYNHPYTYLAQKA
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHCCCE
VISIPITPQVTGVVSEVTEKQNVLIKKGEVLFKLDPARYQARVNRLQADLVTEINNTQVL
EEEECCCCCHHHHHHHHHHHHCEEEECCCEEEEECHHHHHHHHHHHHHHHHHHCCCCEEH
KGQLDEAIANTSRVSAERDRLYKDYQRYVRGSQAKVNPFSESDIDNARQNYLAQDALVKG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
SVAEQAQIKSQLDSVINGEQSQIVSLRAQLAEAKYNLDQTVIRAPSDGYVTQVLIRPGTY
CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHEEECCCCCCEEEEEECCCCE
AAAIPLRPVMVFIPEQKRQIIAQFRQNSLLRLKAGDEAEVVFNAFPGQVFPGKLIRILPV
EEECCCCEEEEEECCHHHHHHHHHHCCCEEEEECCCCCEEEEECCCCCCCCCCEEEEEEE
VPGGSYQAQGTLQSLSVAAGSDGVLAVIELAPNSEIDELPDGIFSQVAVYSDHFTHVAVM
CCCCCCCCCCHHHHHEEECCCCCEEEEEEECCCCCHHHCCHHHHHHHHHHHHHHHHHHHH
RKVLLRMTSWMHYLYLDH
HHHHHHHHHHHHHHEECC
>Mature Secondary Structure
MDLLIILTYVAFAWSIFKIFKIPVNKWTVPTAALGGVFLIGALILLMNYNHPYTYLAQKA
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHCCCE
VISIPITPQVTGVVSEVTEKQNVLIKKGEVLFKLDPARYQARVNRLQADLVTEINNTQVL
EEEECCCCCHHHHHHHHHHHHCEEEECCCEEEEECHHHHHHHHHHHHHHHHHHCCCCEEH
KGQLDEAIANTSRVSAERDRLYKDYQRYVRGSQAKVNPFSESDIDNARQNYLAQDALVKG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
SVAEQAQIKSQLDSVINGEQSQIVSLRAQLAEAKYNLDQTVIRAPSDGYVTQVLIRPGTY
CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHEEECCCCCCEEEEEECCCCE
AAAIPLRPVMVFIPEQKRQIIAQFRQNSLLRLKAGDEAEVVFNAFPGQVFPGKLIRILPV
EEECCCCEEEEEECCHHHHHHHHHHCCCEEEEECCCCCEEEEECCCCCCCCCCEEEEEEE
VPGGSYQAQGTLQSLSVAAGSDGVLAVIELAPNSEIDELPDGIFSQVAVYSDHFTHVAVM
CCCCCCCCCCHHHHHEEECCCCCEEEEEEECCCCCHHHCCHHHHHHHHHHHHHHHHHHHH
RKVLLRMTSWMHYLYLDH
HHHHHHHHHHHHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]