Click here to switch to the map view.

The map label for this gene is ydcR [H]

Identifier: 157368361

GI number: 157368361

Start: 122132

End: 123586

Strand: Reverse

Name: ydcR [H]

Synonym: Spro_0112

Alternate gene names: 157368361

Gene position: 123586-122132 (Counterclockwise)

Preceding gene: 157368366

Following gene: 157368360

Centisome position: 2.27

GC content: 51.07

Gene sequence:

>1455_bases
ATGCCGATGGAGCAGACGGAAGCGGGAAGACAGGGCAGCCTGTACCGTCAGATTGCCGAACAGATCAAACAGGCAATCCA
CGCAGGATTTTTACCTGCCAATACACGTTTGCCGTCGGTAAGAACGCTGGCCACTCAATACAACATCAGTCTGACAACCG
CACTTAAAACCTTGCGTACCCTGGAAGATGAACATTACGCCGTAGCCAAACCCAAATCCGGTTTTTTTGTCGCACCAAGA
CGGCATTCGCTGCAAAAGGACGCCGTTATCGTGGAACAGCCACGTGAGATTGCGCCGCTGGATGAACAAACCGAACTGCA
CATGGCAATGGTGGGGGAAGATTGCCGCGTTCGTCTGGATCTGGCTAATGGTGATAGCTCTTTGTACCCCATCAAAAAAC
TGAGTTTGATCATGCGCCAGCTGGGTTATAGCAAGCCATTTTTGCTTGGTGATACGGTCAAAGGCTCTGGCTATGCGCCG
TTAAAAACAGAAATCGCCCGACGAGCGATAGACTACGGCTGCAACATCAACCCGGATAACATTTTAGTGACCAACGGCTG
CGTGGAGGCACTGTCGCTCTCGCTGATGGCGACAGTAAAACCGGGAGATGCGGTTGCCGTTGAATCGCCCTGCTATTTCG
TTTTATTGCAAATGTTGCGTCATCTCAAACTACGCGTGATTGAGGTTGAAACGGGTAACGAAGGCTATGTTGATAGCGAA
AAGCTGGTTGCGCTGTTCCAGAGAAAAGCGGTGAAGGTGTTTGTCACCCTCGCCAATGTTAATAACCCTCTGGGCAAAAC
CATACCGAACGAGAAAAAAGCTCACATCGCGCGGCAGGCCGATGAAAACGGTGTGATTATTATTGAAGATGACACCTTTG
GCGACATCTCCTTTGGTGTTCAACGACCATTTCCAATGAGGGCCTTTAGCCCCAATGTCATCCTGTGCAGCGGTTTCTCT
AAAACCGTGGCGCCTGGCATGCGTGTCGGTTGGGTTCACAGCAACCATTACATGCGAAAAATCACCTCGCTAAAATATAC
CTCGACCATGGGCTCACCCATATTGCCGCAGGCCACCATTGCCGAATTACTGAGCAATGGCGGATACGACGCCCATCTGC
GCAAACTCAGGCAAAAGTTGGCTAACCTGGTGAACAAAATCCGTCAGGTAGTGCTTCGAGCATTTCCCCCGGGCACAAAA
GTCTCTGAGCCTGAAGGCGGTTATGTGCTGTGGGTGGAAATGCCGAAGAATGCCTTGAACGTACGTTCACTGTTTATCAA
GGCGCGTAATGCCGGGATCGGTATCGCCCCCGGGCATATTTTTGCCACGGATAACCGCTACGATCACTGTTTCCGACTGA
ATGCAGGCTTTGGTTATAACGATGAAGTTGAACAGGCGATCGCCCAGCTTGGGCAATGGTGTACTCAATCACTTGTGGGG
CATGAAGGGGGTTGA

Upstream 100 bases:

>100_bases
TGAACACGTTGAATTCATTATTTCCAAGCCTTGCTAGCTAAACTACTATCAAAGTAATCTGTTTTATACGTACAGATCCG
AGCGATATGGAGTGGAACAG

Downstream 100 bases:

>100_bases
TTGGCGGAAGATCACAGATGGGAAATGGTAGCAAAAAATTGCCCACATAAACTTATATCGACGTAGTATAATACGTTAGA
AGTGTTGAAACAGAACCCTT

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 484; Mature: 483

Protein sequence:

>484_residues
MPMEQTEAGRQGSLYRQIAEQIKQAIHAGFLPANTRLPSVRTLATQYNISLTTALKTLRTLEDEHYAVAKPKSGFFVAPR
RHSLQKDAVIVEQPREIAPLDEQTELHMAMVGEDCRVRLDLANGDSSLYPIKKLSLIMRQLGYSKPFLLGDTVKGSGYAP
LKTEIARRAIDYGCNINPDNILVTNGCVEALSLSLMATVKPGDAVAVESPCYFVLLQMLRHLKLRVIEVETGNEGYVDSE
KLVALFQRKAVKVFVTLANVNNPLGKTIPNEKKAHIARQADENGVIIIEDDTFGDISFGVQRPFPMRAFSPNVILCSGFS
KTVAPGMRVGWVHSNHYMRKITSLKYTSTMGSPILPQATIAELLSNGGYDAHLRKLRQKLANLVNKIRQVVLRAFPPGTK
VSEPEGGYVLWVEMPKNALNVRSLFIKARNAGIGIAPGHIFATDNRYDHCFRLNAGFGYNDEVEQAIAQLGQWCTQSLVG
HEGG

Sequences:

>Translated_484_residues
MPMEQTEAGRQGSLYRQIAEQIKQAIHAGFLPANTRLPSVRTLATQYNISLTTALKTLRTLEDEHYAVAKPKSGFFVAPR
RHSLQKDAVIVEQPREIAPLDEQTELHMAMVGEDCRVRLDLANGDSSLYPIKKLSLIMRQLGYSKPFLLGDTVKGSGYAP
LKTEIARRAIDYGCNINPDNILVTNGCVEALSLSLMATVKPGDAVAVESPCYFVLLQMLRHLKLRVIEVETGNEGYVDSE
KLVALFQRKAVKVFVTLANVNNPLGKTIPNEKKAHIARQADENGVIIIEDDTFGDISFGVQRPFPMRAFSPNVILCSGFS
KTVAPGMRVGWVHSNHYMRKITSLKYTSTMGSPILPQATIAELLSNGGYDAHLRKLRQKLANLVNKIRQVVLRAFPPGTK
VSEPEGGYVLWVEMPKNALNVRSLFIKARNAGIGIAPGHIFATDNRYDHCFRLNAGFGYNDEVEQAIAQLGQWCTQSLVG
HEGG
>Mature_483_residues
PMEQTEAGRQGSLYRQIAEQIKQAIHAGFLPANTRLPSVRTLATQYNISLTTALKTLRTLEDEHYAVAKPKSGFFVAPRR
HSLQKDAVIVEQPREIAPLDEQTELHMAMVGEDCRVRLDLANGDSSLYPIKKLSLIMRQLGYSKPFLLGDTVKGSGYAPL
KTEIARRAIDYGCNINPDNILVTNGCVEALSLSLMATVKPGDAVAVESPCYFVLLQMLRHLKLRVIEVETGNEGYVDSEK
LVALFQRKAVKVFVTLANVNNPLGKTIPNEKKAHIARQADENGVIIIEDDTFGDISFGVQRPFPMRAFSPNVILCSGFSK
TVAPGMRVGWVHSNHYMRKITSLKYTSTMGSPILPQATIAELLSNGGYDAHLRKLRQKLANLVNKIRQVVLRAFPPGTKV
SEPEGGYVLWVEMPKNALNVRSLFIKARNAGIGIAPGHIFATDNRYDHCFRLNAGFGYNDEVEQAIAQLGQWCTQSLVGH
EGG

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=318, Percent_Identity=25.4716981132075, Blast_Score=80, Evalue=6e-15,
Organism=Homo sapiens, GI33469970, Length=318, Percent_Identity=25.4716981132075, Blast_Score=80, Evalue=6e-15,
Organism=Escherichia coli, GI1787710, Length=466, Percent_Identity=33.6909871244635, Blast_Score=277, Evalue=1e-75,
Organism=Escherichia coli, GI1790797, Length=477, Percent_Identity=31.0272536687631, Blast_Score=248, Evalue=7e-67,
Organism=Escherichia coli, GI48994949, Length=216, Percent_Identity=22.2222222222222, Blast_Score=63, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI17567663, Length=319, Percent_Identity=22.884012539185, Blast_Score=80, Evalue=2e-15,
Organism=Saccharomyces cerevisiae, GI6321000, Length=248, Percent_Identity=23.7903225806452, Blast_Score=66, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 53468; Mature: 53337

Theoretical pI: Translated: 9.33; Mature: 9.33

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPMEQTEAGRQGSLYRQIAEQIKQAIHAGFLPANTRLPSVRTLATQYNISLTTALKTLRT
CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHEECCHHHHHHHHHHH
LEDEHYAVAKPKSGFFVAPRRHSLQKDAVIVEQPREIAPLDEQTELHMAMVGEDCRVRLD
HCCCCEEEECCCCCEEECCCCCCCCCCCEEEECCCCCCCCCCCHHEEEEEECCCCEEEEE
LANGDSSLYPIKKLSLIMRQLGYSKPFLLGDTVKGSGYAPLKTEIARRAIDYGCNINPDN
EECCCCCCCHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCC
ILVTNGCVEALSLSLMATVKPGDAVAVESPCYFVLLQMLRHLKLRVIEVETGNEGYVDSE
EEEECCHHHHHHEEEEEEECCCCEEEECCCHHHHHHHHHHHCEEEEEEEECCCCCCCCHH
KLVALFQRKAVKVFVTLANVNNPLGKTIPNEKKAHIARQADENGVIIIEDDTFGDISFGV
HHHHHHHHCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCCEEEEECCCCCCCCCCC
QRPFPMRAFSPNVILCSGFSKTVAPGMRVGWVHSNHYMRKITSLKYTSTMGSPILPQATI
CCCCCCCCCCCCEEEECCCCHHCCCCCEEEEEECCHHHHHHHHEEEECCCCCCCCCHHHH
AELLSNGGYDAHLRKLRQKLANLVNKIRQVVLRAFPPGTKVSEPEGGYVLWVEMPKNALN
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCHHH
VRSLFIKARNAGIGIAPGHIFATDNRYDHCFRLNAGFGYNDEVEQAIAQLGQWCTQSLVG
HHHHEEEECCCCCEECCCEEEEECCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHC
HEGG
CCCC
>Mature Secondary Structure 
PMEQTEAGRQGSLYRQIAEQIKQAIHAGFLPANTRLPSVRTLATQYNISLTTALKTLRT
CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHEECCHHHHHHHHHHH
LEDEHYAVAKPKSGFFVAPRRHSLQKDAVIVEQPREIAPLDEQTELHMAMVGEDCRVRLD
HCCCCEEEECCCCCEEECCCCCCCCCCCEEEECCCCCCCCCCCHHEEEEEECCCCEEEEE
LANGDSSLYPIKKLSLIMRQLGYSKPFLLGDTVKGSGYAPLKTEIARRAIDYGCNINPDN
EECCCCCCCHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCC
ILVTNGCVEALSLSLMATVKPGDAVAVESPCYFVLLQMLRHLKLRVIEVETGNEGYVDSE
EEEECCHHHHHHEEEEEEECCCCEEEECCCHHHHHHHHHHHCEEEEEEEECCCCCCCCHH
KLVALFQRKAVKVFVTLANVNNPLGKTIPNEKKAHIARQADENGVIIIEDDTFGDISFGV
HHHHHHHHCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCCEEEEECCCCCCCCCCC
QRPFPMRAFSPNVILCSGFSKTVAPGMRVGWVHSNHYMRKITSLKYTSTMGSPILPQATI
CCCCCCCCCCCCEEEECCCCHHCCCCCEEEEEECCHHHHHHHHEEEECCCCCCCCCHHHH
AELLSNGGYDAHLRKLRQKLANLVNKIRQVVLRAFPPGTKVSEPEGGYVLWVEMPKNALN
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCHHH
VRSLFIKARNAGIGIAPGHIFATDNRYDHCFRLNAGFGYNDEVEQAIAQLGQWCTQSLVG
HHHHEEEECCCCCEECCCEEEEECCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHC
HEGG
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]