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The map label for this gene is ppdC

Identifier: 157162275

GI number: 157162275

Start: 2980760

End: 2981083

Strand: Reverse

Name: ppdC

Synonym: EcHS_A2969

Alternate gene names: 157162275

Gene position: 2981083-2980760 (Counterclockwise)

Preceding gene: 157162276

Following gene: 157162274

Centisome position: 64.2

GC content: 54.94

Gene sequence:

>324_bases
ATGTCAGCTTCCCTGAAGAATCAACAAGGCTTTAGCCTGCCGGAGGTAATGTTGGCGATGGTGTTGATGGTGATGATTGT
CACTGCGTTATCGGGTTTCCAGCGAACATTAATGAACAGTCTTGCCAGCAGAAACCAGTACCAACAGCTCTGGCGGCATG
GCTGGCAGCAAACGCAACTGCGCGCGATTTCGCCACCTGCCAACTGGCAGGTCAACCGAATGCAGACATCGCAGGCGGGA
TGTGTCAGCATCAGCGTTACGCTAGTTTCACCCGGGGGCAGAGAAGGCGAGATGACCCGCCTGCATTGCCCGAATCGTCA
GTAG

Upstream 100 bases:

>100_bases
AAGGCGTTTCGTTGTGGCGAACAGGCGAAGTCATTGATGGAAACATTGTTTTTTCGCCACGCGGCTGGAGCGATTTTTGT
CCGCTGAAAGAGAGGGCGTT

Downstream 100 bases:

>100_bases
TCAGGAGCCGCTATGTTAAGGGTCTACCATTCCAATCGTCTGGACGTGCTGGAAGCGTTGATGGAGTTTATTGTCGAACG
CGAACGGCTGGACGATCCTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 107; Mature: 106

Protein sequence:

>107_residues
MSASLKNQQGFSLPEVMLAMVLMVMIVTALSGFQRTLMNSLASRNQYQQLWRHGWQQTQLRAISPPANWQVNRMQTSQAG
CVSISVTLVSPGGREGEMTRLHCPNRQ

Sequences:

>Translated_107_residues
MSASLKNQQGFSLPEVMLAMVLMVMIVTALSGFQRTLMNSLASRNQYQQLWRHGWQQTQLRAISPPANWQVNRMQTSQAG
CVSISVTLVSPGGREGEMTRLHCPNRQ
>Mature_106_residues
SASLKNQQGFSLPEVMLAMVLMVMIVTALSGFQRTLMNSLASRNQYQQLWRHGWQQTQLRAISPPANWQVNRMQTSQAGC
VSISVTLVSPGGREGEMTRLHCPNRQ

Specific function: Not yet known

COG id: COG4967

COG function: function code NU; Tfp pilus assembly protein PilV

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789187, Length=107, Percent_Identity=100, Blast_Score=218, Evalue=6e-59,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PPDC_ECOLI (P08372)

Other databases:

- EMBL:   X03966
- EMBL:   U29581
- EMBL:   U00096
- EMBL:   AP009048
- PIR:   E24137
- RefSeq:   AP_003386.1
- RefSeq:   NP_417300.1
- ProteinModelPortal:   P08372
- STRING:   P08372
- EnsemblBacteria:   EBESCT00000004271
- EnsemblBacteria:   EBESCT00000017249
- GeneID:   945797
- GenomeReviews:   AP009048_GR
- GenomeReviews:   U00096_GR
- KEGG:   ecj:JW2791
- KEGG:   eco:b2823
- EchoBASE:   EB1143
- EcoGene:   EG11154
- eggNOG:   COG4967
- GeneTree:   EBGT00050000010905
- HOGENOM:   HBG756906
- OMA:   TRLHCPV
- ProtClustDB:   PRK10332
- BioCyc:   EcoCyc:EG11154-MONOMER
- Genevestigator:   P08372
- InterPro:   IPR022204
- InterPro:   IPR012902
- InterPro:   IPR001120
- TIGRFAMs:   TIGR02532

Pfam domain/function: PF12528 DUF3728

EC number: NA

Molecular weight: Translated: 12004; Mature: 11873

Theoretical pI: Translated: 11.72; Mature: 11.72

Prosite motif: PS00409 PROKAR_NTER_METHYL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
7.5 %Met     (Translated Protein)
9.3 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
6.6 %Met     (Mature Protein)
8.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSASLKNQQGFSLPEVMLAMVLMVMIVTALSGFQRTLMNSLASRNQYQQLWRHGWQQTQL
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCE
RAISPPANWQVNRMQTSQAGCVSISVTLVSPGGREGEMTRLHCPNRQ
EEECCCCCCEEEEEECCCCCEEEEEEEEECCCCCCCCEEEECCCCCC
>Mature Secondary Structure 
SASLKNQQGFSLPEVMLAMVLMVMIVTALSGFQRTLMNSLASRNQYQQLWRHGWQQTQL
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCE
RAISPPANWQVNRMQTSQAGCVSISVTLVSPGGREGEMTRLHCPNRQ
EEECCCCCCEEEEEECCCCCEEEEEEEEECCCCCCCCEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3520484; 9278503; 7934814