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The map label for this gene is ygbI [H]

Identifier: 157162183

GI number: 157162183

Start: 2877885

End: 2878652

Strand: Reverse

Name: ygbI [H]

Synonym: EcHS_A2873

Alternate gene names: 157162183

Gene position: 2878652-2877885 (Counterclockwise)

Preceding gene: 157162189

Following gene: 157162180

Centisome position: 61.99

GC content: 51.69

Gene sequence:

>768_bases
TTGATACCCGTAGAGCGTCGCCAAATCATCCTTGAGATGGTAGCTGAAAAAGGCATTGTCAGTATTGCTGAACTAACGGA
CAGAATGAATGTGTCACATATGACCATTCGTCGGGATTTACAAAAACTGGAGCAGCAGGGAGCCGTTGTGCTGGTGTCCG
GAGGCGTCCAGTCTCCGGGACGCGTGGCGCATGAACCTTCTCATCAGGTAAAAACTGCGCTGGCAATGACGCAAAAAGCG
GCTATTGGCAAGCTGGCGGCAAGTCTTGTTCAGCCGGGAAGTTGTATCTATCTGGATGCGGGAACGACCACGTTAGCGAT
AGCACAGCATCTGATTCACATGGAGTCACTGACTGTGGTCACAAACGATTTCGTTATTGCAGACTACTTGCTCGACAACA
GTAATTGCACAATTATTCACACTGGCGGTGCAGTGTGTCGGGAAAACCGTTCCTGTGTCGGGGAAGCCGCTGCGACCATG
CTGCGCAGCCTGATGATTGATCAGGCTTTTATTTCTGCATCGTCATGGAGTGTGCGGGGGATTTCTACGCCAGCGGAAGA
TAAAGTCACGGTGAAACGGGCGATTGCCAGTGCCAGCCGCCAGCGAGTTTTGGTCTGTGATGCGACGAAATATGGTCAGG
TGGCGACATGGCTGGCGTTACCATTAAGCGAGTTTGATCAGATTATCACAGACGACGGTTTGCCGGAGAGTGCCAGTCGC
GCGCTGGCGAAGCAGGATCTCTCTTTGCTGGTAGCGAAAAATGAATAA

Upstream 100 bases:

>100_bases
CATTGTGTGTTATTTTATGTGAACTAAGCGTTAGTTGCGCCGCGCACGTTTCGCAGGCAAATAGCGTAGAATGTCAGCAG
GACAAAGGAAGGAGCAAAAG

Downstream 100 bases:

>100_bases
TGGCCTGCAATAACATTTGGTTACTCATGCTTCACAGAAGAAGCATGAGACTACTTTATTTTATAAAATGACAGCCGCCC
GCTTTTCGGCGTGCCGGTAT

Product: DeoR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 255; Mature: 255

Protein sequence:

>255_residues
MIPVERRQIILEMVAEKGIVSIAELTDRMNVSHMTIRRDLQKLEQQGAVVLVSGGVQSPGRVAHEPSHQVKTALAMTQKA
AIGKLAASLVQPGSCIYLDAGTTTLAIAQHLIHMESLTVVTNDFVIADYLLDNSNCTIIHTGGAVCRENRSCVGEAAATM
LRSLMIDQAFISASSWSVRGISTPAEDKVTVKRAIASASRQRVLVCDATKYGQVATWLALPLSEFDQIITDDGLPESASR
ALAKQDLSLLVAKNE

Sequences:

>Translated_255_residues
MIPVERRQIILEMVAEKGIVSIAELTDRMNVSHMTIRRDLQKLEQQGAVVLVSGGVQSPGRVAHEPSHQVKTALAMTQKA
AIGKLAASLVQPGSCIYLDAGTTTLAIAQHLIHMESLTVVTNDFVIADYLLDNSNCTIIHTGGAVCRENRSCVGEAAATM
LRSLMIDQAFISASSWSVRGISTPAEDKVTVKRAIASASRQRVLVCDATKYGQVATWLALPLSEFDQIITDDGLPESASR
ALAKQDLSLLVAKNE
>Mature_255_residues
MIPVERRQIILEMVAEKGIVSIAELTDRMNVSHMTIRRDLQKLEQQGAVVLVSGGVQSPGRVAHEPSHQVKTALAMTQKA
AIGKLAASLVQPGSCIYLDAGTTTLAIAQHLIHMESLTVVTNDFVIADYLLDNSNCTIIHTGGAVCRENRSCVGEAAATM
LRSLMIDQAFISASSWSVRGISTPAEDKVTVKRAIASASRQRVLVCDATKYGQVATWLALPLSEFDQIITDDGLPESASR
ALAKQDLSLLVAKNE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI226510968, Length=255, Percent_Identity=99.6078431372549, Blast_Score=519, Evalue=1e-149,
Organism=Escherichia coli, GI1789519, Length=246, Percent_Identity=30.8943089430894, Blast_Score=123, Evalue=1e-29,
Organism=Escherichia coli, GI1789059, Length=253, Percent_Identity=29.2490118577075, Blast_Score=113, Evalue=1e-26,
Organism=Escherichia coli, GI1789829, Length=250, Percent_Identity=30.4, Blast_Score=110, Evalue=9e-26,
Organism=Escherichia coli, GI1787540, Length=250, Percent_Identity=28.4, Blast_Score=95, Evalue=5e-21,
Organism=Escherichia coli, GI87082344, Length=234, Percent_Identity=26.9230769230769, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1790635, Length=255, Percent_Identity=24.7058823529412, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1790753, Length=253, Percent_Identity=26.8774703557312, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1788069, Length=233, Percent_Identity=25.3218884120172, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1787063, Length=210, Percent_Identity=30.4761904761905, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1789170, Length=238, Percent_Identity=26.0504201680672, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014036
- InterPro:   IPR001034
- InterPro:   IPR018356
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00455 DeoR; PF08220 HTH_DeoR [H]

EC number: NA

Molecular weight: Translated: 27407; Mature: 27407

Theoretical pI: Translated: 6.78; Mature: 6.78

Prosite motif: PS00894 HTH_DEOR_1 ; PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIPVERRQIILEMVAEKGIVSIAELTDRMNVSHMTIRRDLQKLEQQGAVVLVSGGVQSPG
CCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCC
RVAHEPSHQVKTALAMTQKAAIGKLAASLVQPGSCIYLDAGTTTLAIAQHLIHMESLTVV
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHEEE
TNDFVIADYLLDNSNCTIIHTGGAVCRENRSCVGEAAATMLRSLMIDQAFISASSWSVRG
ECCEEEEEEEECCCCEEEEECCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEC
ISTPAEDKVTVKRAIASASRQRVLVCDATKYGQVATWLALPLSEFDQIITDDGLPESASR
CCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHCCHHHHHHHHCCCCCCHHHHH
ALAKQDLSLLVAKNE
HHHHHCCEEEEEECC
>Mature Secondary Structure
MIPVERRQIILEMVAEKGIVSIAELTDRMNVSHMTIRRDLQKLEQQGAVVLVSGGVQSPG
CCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCC
RVAHEPSHQVKTALAMTQKAAIGKLAASLVQPGSCIYLDAGTTTLAIAQHLIHMESLTVV
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHEEE
TNDFVIADYLLDNSNCTIIHTGGAVCRENRSCVGEAAATMLRSLMIDQAFISASSWSVRG
ECCEEEEEEEECCCCEEEEECCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEC
ISTPAEDKVTVKRAIASASRQRVLVCDATKYGQVATWLALPLSEFDQIITDDGLPESASR
CCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHCCHHHHHHHHCCCCCCHHHHH
ALAKQDLSLLVAKNE
HHHHHCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]