Click here to switch to the map view.

The map label for this gene is ygbA

Identifier: 157162179

GI number: 157162179

Start: 2873871

End: 2874224

Strand: Reverse

Name: ygbA

Synonym: EcHS_A2869

Alternate gene names: 157162179

Gene position: 2874224-2873871 (Counterclockwise)

Preceding gene: 157162180

Following gene: 157162172

Centisome position: 61.9

GC content: 50.56

Gene sequence:

>354_bases
ATGTCCGGCAAGCGTATCTCTCGTGAAAAACTGACGATTAAAAAAATGATCGATCTTTATCAAGCGAAATGCCCGCAGGC
GTCAGCGGAGCCGGAGCATTACGAGGCGTTGTTTGTTTACGCGCAAAAGCGGCTGGATAAATGTGTGTTCGGCGAAGAGA
AACCAGCCTGTAAGCAGTGTCCGGTGCACTGTTACCAGCCTGCAAAGCGTGAAGAGATGAAACAGATTATGCGTTGGGCC
GGGCCGAGAATGCTGTGGCGTCATCCGATCTTAACCGTGCGTCATCTCATCGATGACAAGCGTCCGGTGCCAGAACTGCC
GGAAAAATATCGTCCGAAAAAACCTCATGAATAG

Upstream 100 bases:

>100_bases
CGCAAAATTGTATCGGTTGGCTAACCCTTCTTCTTTGGAGTCATAGTGCCCTTTAAGATTAAGATGTAATATAAATACAT
CTTAATGAGGTGGAGGCAGC

Downstream 100 bases:

>100_bases
TATGCCGGACAGGCAGATCTGTCCGGCAATTTGCAGTTAAATCAATGCCGATTTATCAATTCCCAGCCGCTTCATCCGTG
ACAGCAGGGTCGTGCGTTTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 117; Mature: 116

Protein sequence:

>117_residues
MSGKRISREKLTIKKMIDLYQAKCPQASAEPEHYEALFVYAQKRLDKCVFGEEKPACKQCPVHCYQPAKREEMKQIMRWA
GPRMLWRHPILTVRHLIDDKRPVPELPEKYRPKKPHE

Sequences:

>Translated_117_residues
MSGKRISREKLTIKKMIDLYQAKCPQASAEPEHYEALFVYAQKRLDKCVFGEEKPACKQCPVHCYQPAKREEMKQIMRWA
GPRMLWRHPILTVRHLIDDKRPVPELPEKYRPKKPHE
>Mature_116_residues
SGKRISREKLTIKKMIDLYQAKCPQASAEPEHYEALFVYAQKRLDKCVFGEEKPACKQCPVHCYQPAKREEMKQIMRWAG
PRMLWRHPILTVRHLIDDKRPVPELPEKYRPKKPHE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789088, Length=117, Percent_Identity=100, Blast_Score=240, Evalue=2e-65,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YGBA_ECOLI (P25728)

Other databases:

- EMBL:   M64730
- EMBL:   U29579
- EMBL:   U00096
- EMBL:   AP009048
- PIR:   H65053
- RefSeq:   AP_003299.1
- RefSeq:   NP_417212.1
- ProteinModelPortal:   P25728
- STRING:   P25728
- EnsemblBacteria:   EBESCT00000001355
- EnsemblBacteria:   EBESCT00000018180
- GeneID:   947187
- GenomeReviews:   AP009048_GR
- GenomeReviews:   U00096_GR
- KEGG:   ecj:JW2702
- KEGG:   eco:b2732
- EchoBASE:   EB1264
- EcoGene:   EG11287
- eggNOG:   NOG46811
- GeneTree:   EBGT00050000010002
- HOGENOM:   HBG321125
- OMA:   HPILTIR
- ProtClustDB:   PRK10410
- BioCyc:   EcoCyc:EG11287-MONOMER
- Genevestigator:   P25728
- InterPro:   IPR020483
- ProDom:   PD075772

Pfam domain/function: PF11756 YgbA_NO

EC number: NA

Molecular weight: Translated: 13941; Mature: 13809

Theoretical pI: Translated: 9.99; Mature: 9.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.3 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
8.5 %Cys+Met (Translated Protein)
4.3 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
7.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGKRISREKLTIKKMIDLYQAKCPQASAEPEHYEALFVYAQKRLDKCVFGEEKPACKQC
CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHC
PVHCYQPAKREEMKQIMRWAGPRMLWRHPILTVRHLIDDKRPVPELPEKYRPKKPHE
CCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCCCCCC
>Mature Secondary Structure 
SGKRISREKLTIKKMIDLYQAKCPQASAEPEHYEALFVYAQKRLDKCVFGEEKPACKQC
CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHC
PVHCYQPAKREEMKQIMRWAGPRMLWRHPILTVRHLIDDKRPVPELPEKYRPKKPHE
CCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1938937; 9278503