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The map label for this gene is ygaQ [H]

Identifier: 157162108

GI number: 157162108

Start: 2803842

End: 2806094

Strand: Direct

Name: ygaQ [H]

Synonym: EcHS_A2793

Alternate gene names: 157162108

Gene position: 2803842-2806094 (Clockwise)

Preceding gene: 157162106

Following gene: 157162109

Centisome position: 60.38

GC content: 37.55

Gene sequence:

>2253_bases
ATGTTTTCTATAAAACCAGGACCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGACGGGGA
TCTAAATTCCAAATTAAATACATTAGAATATCTAAACTGTATAACAAACATTATTAATTCTTGTGGAGTTTACCCTCAAG
GATTAAAAGACAGAGAAATTATATCAACTTTTCACGCAGAAAAAGTTATTAATGATCTGTTAAAAAACGATTATAAAATT
TCCCTTTCTCCAGATACAACTTATCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGA
AGGAAAAACATGGGTTTATCAACGAGATACAATAATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCCTGCTG
AACACTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGCTATTAACATTCCTGACTAT
GAGCTGGCAGCCGATGTATATAATATTAACGTGACGTCACCTTCCGGACAGCAAGAAACATTTAAAATATTAATCAATCC
AGAACATCTACGGCAAACACTTGAGCGTAAATCTCTTACTGCTGTTCAGAAATCACAATGTGAAATCATCACCCCCAAAA
AACCTGGCGAAGCGATTCTTCATGCTTTTAATGCCACCTACCAGCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGC
CATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGTGCCGACGGACCAGAAACTCCCGAAGAAGAAAAAGGTTA
CTGGTTTCACGCTTATCAACCCGAAGATCTTTGTACCATCCACAATCCAATGGGAGATTTGCAGGATTTTATCGCATTGG
TTAAAGATGCTAAAAAATTTGGTATCGATATCATTCCTGATTATACCTTTAACTTTATGGGAATCGGGGGTAGTGGTAAA
AATGACCTGGATTATCCCTCTGCTGATATACGAGCGAAGATCAGTAAAGATATAGAAAGTGGTATCCCTGGCTATTGGCA
AGGTCAGGTTTTGATTCCATTTACTATAGATCCAGTAACAAAAGAACGTAAACAAATCCATCCAGAAGATATACATCTCA
CTGCAAAAGACTTCGAAGCAAGTAAAGATAACATCTCTAAGGATGAATGGGAAAACCTCCATGCATTAAAAGAAAAGCGT
TTAAATGGAATGCCTAAAACAACACCCAAAAGTGACCAGGTTATTATGTTGCAAAATCAATACGTTCGTGAAATGCGAAA
ATATGGCGTACGAGGTTTACGTTATGATGCGGCAAAACACTCAAAACATGAACAAATAGAAAGATCAATAACCCCACCGC
TTAAAAATTATAATGAGCGGTTACACAATACTAACTTATTTAACCCAAAATATCATAAAAAAGCCGTTATGAATTACATG
GAATATCTGGTAACTTGTCAGTTGGATGAACAACAAATGTCATCACTGCTTTATGAAAGAGATGATTTAAGCGCCATTGA
TTTTTCATTGCTCATGAAAACGATAAAAGCCTTTTCATTTGGTGGAGATCTCCAAACCCTTGCATCAAAACCGGGTTCCA
CAATCTCAAGCATCCCATCAAAAAGACGGATATTGATTAACATTAACCACGATTTTCCTAACAATGGCAATCTTTTCAAT
GACTTTCTATTTAACCATCAACAAGATGAACAATTAGCAATGGCATATATGGCCGCTCTCCCGTTCAGCAGGCCTTTAGT
TTACTGGGATGGCCAAGTATTAAAATCAACGACTGAAATTAAAAATTATGATGGGTCGACGCGTGTTGGCGATGAGGCGT
GGCTTAATAAAGGTTGCTCTACCTATCAGCAGCTCTACAATGAATTCCACGCATTATATATAGATAAAGCAGGAATATGG
AGCGCATTTGAGGGTGTATTTGCAACTAAAAACGTTCTGGCCTTTAGTCGTGGGGATTCTGTGAACATTAATCACTCTCC
TCATGATGGACTAGTTATAATAAATAAAGGAAACGAAGAAGTTGAAGGTACCTGGCCTAACAAATTGCAACCTGGAATAT
ACAAAAACATGGGGAGTAATAGCGTTAACATTATTATTAATAATACCCGAAAAATTATCCCCCCTGGTAAAGTATTTACG
CTTAGAGGCGGAACTCTAAATATCAATATTCCTGGGCGTAGCGCTCTTCTTTTAGGGAAAACAGGAGAACCGCCGAACTA
TCTCTATTTATAA

Upstream 100 bases:

>100_bases
GATAAAAGTAGGACATCTGTTTGCAATTACTTTCACAACAATTAAACATTTTTATGTTTCCGTATACATCATATTACTCT
ACCATTAGAGGAACTTTATT

Downstream 100 bases:

>100_bases
TTTAATGTTATATCTGCCCCGATAAAACGGGGCAGATAATATGTTTAGTTTACTAACGGTCATTTTGCAGTGAAGCCATT
TACTGTTTTTTATCGACCAG

Product: alpha amylase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 750; Mature: 750

Protein sequence:

>750_residues
MFSIKPGPRNLPIDNPTLLSWNITDGDLNSKLNTLEYLNCITNIINSCGVYPQGLKDREIISTFHAEKVINDLLKNDYKI
SLSPDTTYRELNKAAQRSITAPDRIGEGKTWVYQRDTIIERGDNSGVYQYGPAEHFTHIISDKPSPKDKYVAYAINIPDY
ELAADVYNINVTSPSGQQETFKILINPEHLRQTLERKSLTAVQKSQCEIITPKKPGEAILHAFNATYQQIRENMSEFARC
HYGYIQIPPVTTFRADGPETPEEEKGYWFHAYQPEDLCTIHNPMGDLQDFIALVKDAKKFGIDIIPDYTFNFMGIGGSGK
NDLDYPSADIRAKISKDIESGIPGYWQGQVLIPFTIDPVTKERKQIHPEDIHLTAKDFEASKDNISKDEWENLHALKEKR
LNGMPKTTPKSDQVIMLQNQYVREMRKYGVRGLRYDAAKHSKHEQIERSITPPLKNYNERLHNTNLFNPKYHKKAVMNYM
EYLVTCQLDEQQMSSLLYERDDLSAIDFSLLMKTIKAFSFGGDLQTLASKPGSTISSIPSKRRILININHDFPNNGNLFN
DFLFNHQQDEQLAMAYMAALPFSRPLVYWDGQVLKSTTEIKNYDGSTRVGDEAWLNKGCSTYQQLYNEFHALYIDKAGIW
SAFEGVFATKNVLAFSRGDSVNINHSPHDGLVIINKGNEEVEGTWPNKLQPGIYKNMGSNSVNIIINNTRKIIPPGKVFT
LRGGTLNINIPGRSALLLGKTGEPPNYLYL

Sequences:

>Translated_750_residues
MFSIKPGPRNLPIDNPTLLSWNITDGDLNSKLNTLEYLNCITNIINSCGVYPQGLKDREIISTFHAEKVINDLLKNDYKI
SLSPDTTYRELNKAAQRSITAPDRIGEGKTWVYQRDTIIERGDNSGVYQYGPAEHFTHIISDKPSPKDKYVAYAINIPDY
ELAADVYNINVTSPSGQQETFKILINPEHLRQTLERKSLTAVQKSQCEIITPKKPGEAILHAFNATYQQIRENMSEFARC
HYGYIQIPPVTTFRADGPETPEEEKGYWFHAYQPEDLCTIHNPMGDLQDFIALVKDAKKFGIDIIPDYTFNFMGIGGSGK
NDLDYPSADIRAKISKDIESGIPGYWQGQVLIPFTIDPVTKERKQIHPEDIHLTAKDFEASKDNISKDEWENLHALKEKR
LNGMPKTTPKSDQVIMLQNQYVREMRKYGVRGLRYDAAKHSKHEQIERSITPPLKNYNERLHNTNLFNPKYHKKAVMNYM
EYLVTCQLDEQQMSSLLYERDDLSAIDFSLLMKTIKAFSFGGDLQTLASKPGSTISSIPSKRRILININHDFPNNGNLFN
DFLFNHQQDEQLAMAYMAALPFSRPLVYWDGQVLKSTTEIKNYDGSTRVGDEAWLNKGCSTYQQLYNEFHALYIDKAGIW
SAFEGVFATKNVLAFSRGDSVNINHSPHDGLVIINKGNEEVEGTWPNKLQPGIYKNMGSNSVNIIINNTRKIIPPGKVFT
LRGGTLNINIPGRSALLLGKTGEPPNYLYL
>Mature_750_residues
MFSIKPGPRNLPIDNPTLLSWNITDGDLNSKLNTLEYLNCITNIINSCGVYPQGLKDREIISTFHAEKVINDLLKNDYKI
SLSPDTTYRELNKAAQRSITAPDRIGEGKTWVYQRDTIIERGDNSGVYQYGPAEHFTHIISDKPSPKDKYVAYAINIPDY
ELAADVYNINVTSPSGQQETFKILINPEHLRQTLERKSLTAVQKSQCEIITPKKPGEAILHAFNATYQQIRENMSEFARC
HYGYIQIPPVTTFRADGPETPEEEKGYWFHAYQPEDLCTIHNPMGDLQDFIALVKDAKKFGIDIIPDYTFNFMGIGGSGK
NDLDYPSADIRAKISKDIESGIPGYWQGQVLIPFTIDPVTKERKQIHPEDIHLTAKDFEASKDNISKDEWENLHALKEKR
LNGMPKTTPKSDQVIMLQNQYVREMRKYGVRGLRYDAAKHSKHEQIERSITPPLKNYNERLHNTNLFNPKYHKKAVMNYM
EYLVTCQLDEQQMSSLLYERDDLSAIDFSLLMKTIKAFSFGGDLQTLASKPGSTISSIPSKRRILININHDFPNNGNLFN
DFLFNHQQDEQLAMAYMAALPFSRPLVYWDGQVLKSTTEIKNYDGSTRVGDEAWLNKGCSTYQQLYNEFHALYIDKAGIW
SAFEGVFATKNVLAFSRGDSVNINHSPHDGLVIINKGNEEVEGTWPNKLQPGIYKNMGSNSVNIIINNTRKIIPPGKVFT
LRGGTLNINIPGRSALLLGKTGEPPNYLYL

Specific function: Unknown

COG id: COG0366

COG function: function code G; Glycosidases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006048
- InterPro:   IPR013780
- InterPro:   IPR006047
- InterPro:   IPR017853
- InterPro:   IPR013781 [H]

Pfam domain/function: PF00128 Alpha-amylase; PF02806 Alpha-amylase_C [H]

EC number: NA

Molecular weight: Translated: 85173; Mature: 85173

Theoretical pI: Translated: 6.96; Mature: 6.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFSIKPGPRNLPIDNPTLLSWNITDGDLNSKLNTLEYLNCITNIINSCGVYPQGLKDREI
CCCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH
ISTFHAEKVINDLLKNDYKISLSPDTTYRELNKAAQRSITAPDRIGEGKTWVYQRDTIIE
HHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHCCCCCHHCCCCCEEEEECCHHEE
RGDNSGVYQYGPAEHFTHIISDKPSPKDKYVAYAINIPDYELAADVYNINVTSPSGQQET
CCCCCCEEECCCHHHHHHHHCCCCCCCCCEEEEEECCCCHHHEEEEEEEEECCCCCCCCE
FKILINPEHLRQTLERKSLTAVQKSQCEIITPKKPGEAILHAFNATYQQIRENMSEFARC
EEEEECHHHHHHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
HYGYIQIPPVTTFRADGPETPEEEKGYWFHAYQPEDLCTIHNPMGDLQDFIALVKDAKKF
HCCEEECCCCEEEECCCCCCCCCCCCEEEEEECCCCCEEECCCHHHHHHHHHHHHHHHHC
GIDIIPDYTFNFMGIGGSGKNDLDYPSADIRAKISKDIESGIPGYWQGQVLIPFTIDPVT
CCEEECCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCH
KERKQIHPEDIHLTAKDFEASKDNISKDEWENLHALKEKRLNGMPKTTPKSDQVIMLQNQ
HHHHHCCCCCEEEEHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECHH
YVREMRKYGVRGLRYDAAKHSKHEQIERSITPPLKNYNERLHNTNLFNPKYHKKAVMNYM
HHHHHHHHCCCCEEECHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHH
EYLVTCQLDEQQMSSLLYERDDLSAIDFSLLMKTIKAFSFGGDLQTLASKPGSTISSIPS
HHHHEECCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCHHHHCCC
KRRILININHDFPNNGNLFNDFLFNHQQDEQLAMAYMAALPFSRPLVYWDGQVLKSTTEI
CCEEEEEECCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHH
KNYDGSTRVGDEAWLNKGCSTYQQLYNEFHALYIDKAGIWSAFEGVFATKNVLAFSRGDS
HCCCCCCCCCHHHHHHCCHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHCCEEEEECCCE
VNINHSPHDGLVIINKGNEEVEGTWPNKLQPGIYKNMGSNSVNIIINNTRKIIPPGKVFT
EECCCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHCCCCCEEEEEEECCEEECCCCCEEE
LRGGTLNINIPGRSALLLGKTGEPPNYLYL
EECCEEEEEECCCCEEEEECCCCCCCEECC
>Mature Secondary Structure
MFSIKPGPRNLPIDNPTLLSWNITDGDLNSKLNTLEYLNCITNIINSCGVYPQGLKDREI
CCCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH
ISTFHAEKVINDLLKNDYKISLSPDTTYRELNKAAQRSITAPDRIGEGKTWVYQRDTIIE
HHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHCCCCCHHCCCCCEEEEECCHHEE
RGDNSGVYQYGPAEHFTHIISDKPSPKDKYVAYAINIPDYELAADVYNINVTSPSGQQET
CCCCCCEEECCCHHHHHHHHCCCCCCCCCEEEEEECCCCHHHEEEEEEEEECCCCCCCCE
FKILINPEHLRQTLERKSLTAVQKSQCEIITPKKPGEAILHAFNATYQQIRENMSEFARC
EEEEECHHHHHHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
HYGYIQIPPVTTFRADGPETPEEEKGYWFHAYQPEDLCTIHNPMGDLQDFIALVKDAKKF
HCCEEECCCCEEEECCCCCCCCCCCCEEEEEECCCCCEEECCCHHHHHHHHHHHHHHHHC
GIDIIPDYTFNFMGIGGSGKNDLDYPSADIRAKISKDIESGIPGYWQGQVLIPFTIDPVT
CCEEECCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCH
KERKQIHPEDIHLTAKDFEASKDNISKDEWENLHALKEKRLNGMPKTTPKSDQVIMLQNQ
HHHHHCCCCCEEEEHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECHH
YVREMRKYGVRGLRYDAAKHSKHEQIERSITPPLKNYNERLHNTNLFNPKYHKKAVMNYM
HHHHHHHHCCCCEEECHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHH
EYLVTCQLDEQQMSSLLYERDDLSAIDFSLLMKTIKAFSFGGDLQTLASKPGSTISSIPS
HHHHEECCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCHHHHCCC
KRRILININHDFPNNGNLFNDFLFNHQQDEQLAMAYMAALPFSRPLVYWDGQVLKSTTEI
CCEEEEEECCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHH
KNYDGSTRVGDEAWLNKGCSTYQQLYNEFHALYIDKAGIWSAFEGVFATKNVLAFSRGDS
HCCCCCCCCCHHHHHHCCHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHCCEEEEECCCE
VNINHSPHDGLVIINKGNEEVEGTWPNKLQPGIYKNMGSNSVNIIINNTRKIIPPGKVFT
EECCCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHCCCCCEEEEEEECCEEECCCCCEEE
LRGGTLNINIPGRSALLLGKTGEPPNYLYL
EECCEEEEEECCCCEEEEECCCCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]