Click here to switch to the map view.

The map label for this gene is ycdQ [C]

Identifier: 157161541

GI number: 157161541

Start: 2167078

End: 2167848

Strand: Reverse

Name: ycdQ [C]

Synonym: EcHS_A2187

Alternate gene names: 157161541

Gene position: 2167848-2167078 (Counterclockwise)

Preceding gene: 157161542

Following gene: 157161540

Centisome position: 46.69

GC content: 31.78

Gene sequence:

>771_bases
ATGGATATAAGCGTTATTATTCCCTGTTATAATCGTGAAGCTAGCATTCAAGGGGCTGTACTTTCTGTTTTAAACCAAGT
TGGTAATCATAATATCGAGGTTATCGTAGTTGATGATGGTTCTACAGATGGGTCTATTGATAGACTAAAAGGTTTAAATA
TAAAAGTCTTGCATACAAATGGAAGAACCGGGGCATGCAATGCTAGAAATATAGGAATAGAAGCGGCAATGAATGAGTGG
GTTGCTTTTAACGATAGTGATGACTTTTGGAGAATTGATAAACTTAATTATATAGAGGGAGCTATTAATTCAAATAATGG
TAATATAGATTACATTTTTCATCCTTTTATTCGTGTTGTTGGACTAAAATCAATCATAGGTGGGGTTTATCATTCCACAT
CAGGTGCTATTAAAAACGATTTCCTAAGAAAAATGTTAGCCAATAATATGATCAGCACTCAATGCTTAATTTCAAAAAAA
AATACATTAATTGATTGTGGATATTTTGATATTCATTTAAAAAGATTCCAAGATTGGGAATTTGCATTAAGAATAGCATG
TAAATCTCAAGGCTTCTATATATCGGAACCTTTAGCTTTATGCATTGAATCCTCTGACTCAATTTCGAAAGGTTTTAAAA
AAGGTATTGCAGCACGAGAGTATATATTCGATAAACATCGATCGCTTTATTTAAATAATAAATCATCCATGTGTAGGTTT
TTATTCTCATTGCAACTTAGAAAGATTGTTAGTCTATTGAAGAGAGACTGA

Upstream 100 bases:

>100_bases
AGAGAGTCTTTGAAGATGGGTAAAGATGTTTCAAATATCTATATTAAGAATAACTTTCAAAAAATTTAAATTATTTTAAA
TCAAATTTAAGGTGTCGTTA

Downstream 100 bases:

>100_bases
AATGGCTATATTGAATGCTATAAAAAATTTTTCAATACACAAGGGAAAATTAACATCACCATTATTTATGTTTTGCTTTA
TATGGTTTAGTGTTTTTATC

Product: glycosyl transferase, group 2 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 256; Mature: 256

Protein sequence:

>256_residues
MDISVIIPCYNREASIQGAVLSVLNQVGNHNIEVIVVDDGSTDGSIDRLKGLNIKVLHTNGRTGACNARNIGIEAAMNEW
VAFNDSDDFWRIDKLNYIEGAINSNNGNIDYIFHPFIRVVGLKSIIGGVYHSTSGAIKNDFLRKMLANNMISTQCLISKK
NTLIDCGYFDIHLKRFQDWEFALRIACKSQGFYISEPLALCIESSDSISKGFKKGIAAREYIFDKHRSLYLNNKSSMCRF
LFSLQLRKIVSLLKRD

Sequences:

>Translated_256_residues
MDISVIIPCYNREASIQGAVLSVLNQVGNHNIEVIVVDDGSTDGSIDRLKGLNIKVLHTNGRTGACNARNIGIEAAMNEW
VAFNDSDDFWRIDKLNYIEGAINSNNGNIDYIFHPFIRVVGLKSIIGGVYHSTSGAIKNDFLRKMLANNMISTQCLISKK
NTLIDCGYFDIHLKRFQDWEFALRIACKSQGFYISEPLALCIESSDSISKGFKKGIAAREYIFDKHRSLYLNNKSSMCRF
LFSLQLRKIVSLLKRD
>Mature_256_residues
MDISVIIPCYNREASIQGAVLSVLNQVGNHNIEVIVVDDGSTDGSIDRLKGLNIKVLHTNGRTGACNARNIGIEAAMNEW
VAFNDSDDFWRIDKLNYIEGAINSNNGNIDYIFHPFIRVVGLKSIIGGVYHSTSGAIKNDFLRKMLANNMISTQCLISKK
NTLIDCGYFDIHLKRFQDWEFALRIACKSQGFYISEPLALCIESSDSISKGFKKGIAAREYIFDKHRSLYLNNKSSMCRF
LFSLQLRKIVSLLKRD

Specific function: Unknown

COG id: COG0463

COG function: function code M; Glycosyltransferases involved in cell wall biogenesis

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: NA

Molecular weight: Translated: 28812; Mature: 28812

Theoretical pI: Translated: 8.65; Mature: 8.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDISVIIPCYNREASIQGAVLSVLNQVGNHNIEVIVVDDGSTDGSIDRLKGLNIKVLHTN
CCEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHCCCEEEEEEEC
GRTGACNARNIGIEAAMNEWVAFNDSDDFWRIDKLNYIEGAINSNNGNIDYIFHPFIRVV
CCCCCCCCCCCCHHHHHCCCEEECCCCCEEEECCCCEEECEEECCCCCEEEEHHHHHHHH
GLKSIIGGVYHSTSGAIKNDFLRKMLANNMISTQCLISKKNTLIDCGYFDIHLKRFQDWE
HHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHEEEECCCCEEECCEEEEEEECCCCCE
FALRIACKSQGFYISEPLALCIESSDSISKGFKKGIAAREYIFDKHRSLYLNNKSSMCRF
EEEEEEECCCCEEECCCCEEEECCCCHHHHHHHHCCHHHHHHHHCCCEEEECCHHHHHHH
LFSLQLRKIVSLLKRD
HHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDISVIIPCYNREASIQGAVLSVLNQVGNHNIEVIVVDDGSTDGSIDRLKGLNIKVLHTN
CCEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHCCCEEEEEEEC
GRTGACNARNIGIEAAMNEWVAFNDSDDFWRIDKLNYIEGAINSNNGNIDYIFHPFIRVV
CCCCCCCCCCCCHHHHHCCCEEECCCCCEEEECCCCEEECEEECCCCCEEEEHHHHHHHH
GLKSIIGGVYHSTSGAIKNDFLRKMLANNMISTQCLISKKNTLIDCGYFDIHLKRFQDWE
HHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHEEEECCCCEEECCEEEEEEECCCCCE
FALRIACKSQGFYISEPLALCIESSDSISKGFKKGIAAREYIFDKHRSLYLNNKSSMCRF
EEEEEEECCCCEEECCCCEEEECCCCHHHHHHHHCCHHHHHHHHCCCEEEECCHHHHHHH
LFSLQLRKIVSLLKRD
HHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]