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The map label for this gene is rfbA [H]

Identifier: 157161525

GI number: 157161525

Start: 2151410

End: 2152195

Strand: Reverse

Name: rfbA [H]

Synonym: EcHS_A2171

Alternate gene names: 157161525

Gene position: 2152195-2151410 (Counterclockwise)

Preceding gene: 157161526

Following gene: 157161524

Centisome position: 46.35

GC content: 46.95

Gene sequence:

>786_bases
ATGTTTTCAGCGATCTATCGCTACCGTGGCTTTATTATTGACAGCGTTAAACGGGACTTTCAGTCCCGTTACCAAACCAG
CTTCTTAGGCGCGGCATGGCTGATTTTACAGCCGATCGCCATGATTTCCGTCTATACATTAATTTTTTCTGAATTAATGC
GTGCCCGCCTGGCTGGCATGGATGGTCCTTTTGCATACAGTATCTACTTGTGTTCTGGGGTGTTAACTTGGGGGCTGTTC
ACGGAAATGCTCAACAGTCTGGTCAACGTTTTTCTGACCAACGCCAATATTCTTAAGAAGCTCAGCTTTCCGCGGATCTG
TTTACCGATTATCGTCACTGCTTCGGCATTTATTAACTTCCTGATCATTTTTGGTCTGTTCGTGCTGTTTCTGATCGTCA
CGGGCAATTTCCCTGGCATGATTTTCTTTGAAATCATTCCGGTGCTGATCGTCCAGATGCTGTTCACCCTCGGCCTCGGG
ATCATTCTCGGGGTACTGAACGTTTTTGTCCGCGATGTCGGGCAGTTCGTTAATATCCTGCTTCAGTTTTGGTTCTGGTT
TACGCCAATTGTCTACGTATCCAAAACGCTGCCGGAATGGGTTTCTGGTCTGTTGGCGTATAACCCGATGGCGACCATTA
TCGGTTCCTACCAGAACGTGATGCTCTATCACCAGAGCCCTAACTGGATGGCGCTGCTTCCGGTCACAGTGGTGTCGGTC
ATTCTGTTTTTATTTGCCTGGCGTTTATTTAAAAAACATGCCGCTGATATTGTGGACGAGATTTAA

Upstream 100 bases:

>100_bases
TGGTGCGTCTGAACGTTGAGTCCAGAGCTGATGTGGCGCTTATGAATGAAAAAACGACCGAGCTGCTCAACCTGTTAAAA
GAGGAATTGCTTTGAGTCCG

Downstream 100 bases:

>100_bases
TCATGAGTATCAAAGTTCAGCACGTCGGCAAGGCGTATAAATATTATCCATCTAAATGGAACCGGGTCATTGAGAAACTA
CTGCCGGGCGATAAGCCGCG

Product: ABC-2 type transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 261; Mature: 261

Protein sequence:

>261_residues
MFSAIYRYRGFIIDSVKRDFQSRYQTSFLGAAWLILQPIAMISVYTLIFSELMRARLAGMDGPFAYSIYLCSGVLTWGLF
TEMLNSLVNVFLTNANILKKLSFPRICLPIIVTASAFINFLIIFGLFVLFLIVTGNFPGMIFFEIIPVLIVQMLFTLGLG
IILGVLNVFVRDVGQFVNILLQFWFWFTPIVYVSKTLPEWVSGLLAYNPMATIIGSYQNVMLYHQSPNWMALLPVTVVSV
ILFLFAWRLFKKHAADIVDEI

Sequences:

>Translated_261_residues
MFSAIYRYRGFIIDSVKRDFQSRYQTSFLGAAWLILQPIAMISVYTLIFSELMRARLAGMDGPFAYSIYLCSGVLTWGLF
TEMLNSLVNVFLTNANILKKLSFPRICLPIIVTASAFINFLIIFGLFVLFLIVTGNFPGMIFFEIIPVLIVQMLFTLGLG
IILGVLNVFVRDVGQFVNILLQFWFWFTPIVYVSKTLPEWVSGLLAYNPMATIIGSYQNVMLYHQSPNWMALLPVTVVSV
ILFLFAWRLFKKHAADIVDEI
>Mature_261_residues
MFSAIYRYRGFIIDSVKRDFQSRYQTSFLGAAWLILQPIAMISVYTLIFSELMRARLAGMDGPFAYSIYLCSGVLTWGLF
TEMLNSLVNVFLTNANILKKLSFPRICLPIIVTASAFINFLIIFGLFVLFLIVTGNFPGMIFFEIIPVLIVQMLFTLGLG
IILGVLNVFVRDVGQFVNILLQFWFWFTPIVYVSKTLPEWVSGLLAYNPMATIIGSYQNVMLYHQSPNWMALLPVTVVSV
ILFLFAWRLFKKHAADIVDEI

Specific function: May form an ATP-driven O-antigen export apparatus, in association with rfbB [H]

COG id: COG1682

COG function: function code GM; ABC-type polysaccharide/polyol phosphate export systems, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 29766; Mature: 29766

Theoretical pI: Translated: 9.27; Mature: 9.27

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MFSAIYRYRGFIIDSVKRDFQSRYQTSFLGAAWLILQPIAMISVYTLIFSELMRARLAGM
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
DGPFAYSIYLCSGVLTWGLFTEMLNSLVNVFLTNANILKKLSFPRICLPIIVTASAFINF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHH
LIIFGLFVLFLIVTGNFPGMIFFEIIPVLIVQMLFTLGLGIILGVLNVFVRDVGQFVNIL
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LQFWFWFTPIVYVSKTLPEWVSGLLAYNPMATIIGSYQNVMLYHQSPNWMALLPVTVVSV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCEEEHHHHHHHH
ILFLFAWRLFKKHAADIVDEI
HHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8626291 [H]