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The map label for this gene is dacD [H]

Identifier: 157161502

GI number: 157161502

Start: 2127235

End: 2128401

Strand: Reverse

Name: dacD [H]

Synonym: EcHS_A2148

Alternate gene names: 157161502

Gene position: 2128401-2127235 (Counterclockwise)

Preceding gene: 157161504

Following gene: 157161501

Centisome position: 45.84

GC content: 49.27

Gene sequence:

>1167_bases
TTGAAACGCCGTCTTATTATTGCCGCTTCTTTGTTCGTTTTTAACTTATCGTCTGGTTTTGCGGCGGAAAACATTCCTTT
TTCACCTCAGCCTCCACAGATTCAAGCCGGGTCCTGGGTACTGATGGATTACACCACCGGTCAGATTCTCACCGCGGGTA
ATGAGCATCAACAGCGCAATCCCGCCAGCCTGACAAAGCTGATGACGGGTTATGTCGTGGATCGCGCTATCGATAGTCAT
CGCATTACGCCAGACGATATTGTCACCGTGGGGCGTGATGCGTGGGCGAAAGATAATCCGGTGTTTGTCGGTTCTTCACT
GATGTTTTTGAAAGAGGGCGATCGCGTATCGGTACGTGATTTAAGCCGTGGTTTAATTGTGGATTCCGGAAATGACGCTT
GTGTTGCTCTGGCTGACTATATTGCCGGTGGGCAACGGCAGTTTGTTGAAATGATGAACAACTATGCCGAGAAGCTGCAT
CTCAAGGATACGCATTTTGAAACAGTGCATGGTCTGGATGCACCTGGCCAGCATAGCTCGGCTTATGATTTAGCCGTGCT
TTCTCGCGCTATCATCCACGGCGAGCCCGAGTTTTATCATATGTACAGTGAGAAAAGCCTCACCTGGAACGGTATCACCC
AGCAAAACCGTAACGGGTTATTGTGGGATAAAACCATGAATGTTGACGGCCTGAAAACGGGCCATACTTCTAGTGCCGGT
TTTAACCTCATTGCTTCGGCTGTAGATGGGCAGCGTCGTCTCATTGCAGTGATAATGGGTGCTGACAGCGCAAAAGGTCG
TGAGGAAGAGGCAAGAAAATTACTGCGTTGGGGTCAACAAAACTTTACTACGGTGCAAATTTTGCACCGTGGGAAAAAGG
TTGGTACGGAACGCATCTGGTATGGCGATAAAGAAAATATCGCCCTGGGAACGGAACAAGAGTTCTGGATGGTGCTACCG
AAAGCCGAAATTCCACATATCAAAGCTAAATATACCCTTGATGGTAAAGAACTCACCGCGCCCATTAGCGCCCATCAGCG
GGTAGGGGAAATTGAACTTTACGACCGTGATAAACAAGTGGCGCACTGGCCGCTGGTTACCCTGGAATCTGTCGGGGAAG
GCAGCATGTTTTCCCGCCTGAGTGATTATTTCCACCATAAGGCCTGA

Upstream 100 bases:

>100_bases
AAAATGGGAGGGTAGTCACATTTTCTTGCACTTTATTCCAGCCAGTTCATAAGTATTTCCGTAAAAAGAACAGCTATTTG
AAACTCCTGAGGGTTTGCTG

Downstream 100 bases:

>100_bases
CCTTTCTTTTGCAGCAGACTGGCAGGAGTGCGAGTCTGCTCGCATAATCAACACTCATTCCTTGTGGTTTTAATATTGTA
ATTACACTGTATATAAAAAC

Product: D-alanyl-D-alanine carboxypeptidase

Products: NA

Alternate protein names: DD-carboxypeptidase; DD-peptidase; Penicillin-binding protein 6b; PBP-6b [H]

Number of amino acids: Translated: 388; Mature: 388

Protein sequence:

>388_residues
MKRRLIIAASLFVFNLSSGFAAENIPFSPQPPQIQAGSWVLMDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSH
RITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLH
LKDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSSAG
FNLIASAVDGQRRLIAVIMGADSAKGREEEARKLLRWGQQNFTTVQILHRGKKVGTERIWYGDKENIALGTEQEFWMVLP
KAEIPHIKAKYTLDGKELTAPISAHQRVGEIELYDRDKQVAHWPLVTLESVGEGSMFSRLSDYFHHKA

Sequences:

>Translated_388_residues
MKRRLIIAASLFVFNLSSGFAAENIPFSPQPPQIQAGSWVLMDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSH
RITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLH
LKDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSSAG
FNLIASAVDGQRRLIAVIMGADSAKGREEEARKLLRWGQQNFTTVQILHRGKKVGTERIWYGDKENIALGTEQEFWMVLP
KAEIPHIKAKYTLDGKELTAPISAHQRVGEIELYDRDKQVAHWPLVTLESVGEGSMFSRLSDYFHHKA
>Mature_388_residues
MKRRLIIAASLFVFNLSSGFAAENIPFSPQPPQIQAGSWVLMDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSH
RITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLH
LKDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSSAG
FNLIASAVDGQRRLIAVIMGADSAKGREEEARKLLRWGQQNFTTVQILHRGKKVGTERIWYGDKENIALGTEQEFWMVLP
KAEIPHIKAKYTLDGKELTAPISAHQRVGEIELYDRDKQVAHWPLVTLESVGEGSMFSRLSDYFHHKA

Specific function: Removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors [H]

COG id: COG1686

COG function: function code M; D-alanyl-D-alanine carboxypeptidase

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein (Potential). Note=N-terminal lies in the periplasmic space (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S11 family [H]

Homologues:

Organism=Escherichia coli, GI87082022, Length=388, Percent_Identity=98.7113402061856, Blast_Score=800, Evalue=0.0,
Organism=Escherichia coli, GI1786851, Length=390, Percent_Identity=47.6923076923077, Blast_Score=381, Evalue=1e-107,
Organism=Escherichia coli, GI1787062, Length=385, Percent_Identity=47.2727272727273, Blast_Score=375, Evalue=1e-105,
Organism=Escherichia coli, GI87082054, Length=273, Percent_Identity=25.6410256410256, Blast_Score=68, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012338
- InterPro:   IPR015956
- InterPro:   IPR018044
- InterPro:   IPR012907
- InterPro:   IPR001967 [H]

Pfam domain/function: PF07943 PBP5_C; PF00768 Peptidase_S11 [H]

EC number: =3.4.16.4 [H]

Molecular weight: Translated: 43337; Mature: 43337

Theoretical pI: Translated: 6.94; Mature: 6.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRRLIIAASLFVFNLSSGFAAENIPFSPQPPQIQAGSWVLMDYTTGQILTAGNEHQQRN
CCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEECCCCCCCCC
PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD
HHHHHHHHHHHHHHHHHCCCCCCHHHHEEECCCCCCCCCCEEECCEEEEEECCCEEEHHH
LSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSS
CCCCEEEECCCCCEEEHHHHHCCCHHHHHHHHHHHHHHEECCCCCHHHHCCCCCCCCCCC
AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSSAG
HHHHHHHHHHHHCCCCCEEEEECCCCEEECCCCCCCCCCEEEEECCCCCCCCCCCCCCCC
FNLIASAVDGQRRLIAVIMGADSAKGREEEARKLLRWGQQNFTTVQILHRGKKVGTERIW
HHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHCCCCCCEEEEEECCCHHCCCCEEE
YGDKENIALGTEQEFWMVLPKAEIPHIKAKYTLDGKELTAPISAHQRVGEIELYDRDKQV
ECCCCCEEECCCCCEEEEECCCCCCCEEEEEEECCHHEECCHHHHHCCCCEEEECCCCCE
AHWPLVTLESVGEGSMFSRLSDYFHHKA
EECCEEEEECCCCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MKRRLIIAASLFVFNLSSGFAAENIPFSPQPPQIQAGSWVLMDYTTGQILTAGNEHQQRN
CCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEECCCCCCCCC
PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD
HHHHHHHHHHHHHHHHHCCCCCCHHHHEEECCCCCCCCCCEEECCEEEEEECCCEEEHHH
LSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSS
CCCCEEEECCCCCEEEHHHHHCCCHHHHHHHHHHHHHHEECCCCCHHHHCCCCCCCCCCC
AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSSAG
HHHHHHHHHHHHCCCCCEEEEECCCCEEECCCCCCCCCCEEEEECCCCCCCCCCCCCCCC
FNLIASAVDGQRRLIAVIMGADSAKGREEEARKLLRWGQQNFTTVQILHRGKKVGTERIW
HHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHCCCCCCEEEEEECCCHHCCCCEEE
YGDKENIALGTEQEFWMVLPKAEIPHIKAKYTLDGKELTAPISAHQRVGEIELYDRDKQV
ECCCCCEEECCCCCEEEEECCCCCCCEEEEEEECCHHEECCHHHHHCCCCEEEECCCCCE
AHWPLVTLESVGEGSMFSRLSDYFHHKA
EECCEEEEECCCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8955390; 9097040; 9278503 [H]