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The map label for this gene is slp

Identifier: 157161270

GI number: 157161270

Start: 1908153

End: 1908734

Strand: Reverse

Name: slp

Synonym: EcHS_A1894

Alternate gene names: 157161270

Gene position: 1908734-1908153 (Counterclockwise)

Preceding gene: 157161271

Following gene: 157161269

Centisome position: 41.11

GC content: 53.61

Gene sequence:

>582_bases
ATGGCGGTTCAAAAGAATGTTATCAAAGGCATACTGGCAGGTACGTTTGCGCTAATGCTGAGCGGTTGTGTCACTGTGCC
GGACGCCATTAAAGGCAGCAGTCCCACGCCGCAACAAGATTTAGTTCGGGTGATGAGTGCGCCGCAGCTGTACGTTGGTC
AGGAGGCACGCTTTGGTGGCAAAGTGGTTGCGGTACAAAACCAGCAAGGGAAAACCCGCCTGGAAATTGCTACCGTACCG
CTGGACAGCGGAGCCAGACCGACGCTGGGAGAACCTTCTCGCGGTCGCATTTATGCCGATGTGAACGGTTTTCTGGACCC
GGTGGATTTCCGTGGACAACTGGTTACGGTAGTCGGGCCAATCACTGGTGCGGTTGACGGCAAAATCGGCAATACGCCCT
ATAAATTTATGGTGATGCAAGTAACGGGTTACAAACGTTGGCATTTAACCCAGCAGGTGATTATGCCGCCTCAGCCGATT
GATCCATGGTTTTATGGCGGTCGTGGCTGGCCCTATGGCTACGGCGGATGGGGCTGGTATAATCCCGGTCCCGCGAGAGT
ACAAACAGTTGTAACTGAATAA

Upstream 100 bases:

>100_bases
TGCCGAACCGGTTTATTTACGTAACAACGTCGCATGGAAGAAACTTCCGGGCAAAGAATGAATCTTAAGAGTATGCCCTG
AGAAAAAAAGGAGTCGCACC

Downstream 100 bases:

>100_bases
TTGCTTGTTTTTAAAGAAAAAGAAACAGCGGCTGGTCCGCTGTTTCTGCATTCTTACGGTAAAGATAAAAATAAATAGTG
ACGCGCTTCGCAACCTTTTC

Product: outer membrane protein Slp

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 193; Mature: 192

Protein sequence:

>193_residues
MAVQKNVIKGILAGTFALMLSGCVTVPDAIKGSSPTPQQDLVRVMSAPQLYVGQEARFGGKVVAVQNQQGKTRLEIATVP
LDSGARPTLGEPSRGRIYADVNGFLDPVDFRGQLVTVVGPITGAVDGKIGNTPYKFMVMQVTGYKRWHLTQQVIMPPQPI
DPWFYGGRGWPYGYGGWGWYNPGPARVQTVVTE

Sequences:

>Translated_193_residues
MAVQKNVIKGILAGTFALMLSGCVTVPDAIKGSSPTPQQDLVRVMSAPQLYVGQEARFGGKVVAVQNQQGKTRLEIATVP
LDSGARPTLGEPSRGRIYADVNGFLDPVDFRGQLVTVVGPITGAVDGKIGNTPYKFMVMQVTGYKRWHLTQQVIMPPQPI
DPWFYGGRGWPYGYGGWGWYNPGPARVQTVVTE
>Mature_192_residues
AVQKNVIKGILAGTFALMLSGCVTVPDAIKGSSPTPQQDLVRVMSAPQLYVGQEARFGGKVVAVQNQQGKTRLEIATVPL
DSGARPTLGEPSRGRIYADVNGFLDPVDFRGQLVTVVGPITGAVDGKIGNTPYKFMVMQVTGYKRWHLTQQVIMPPQPID
PWFYGGRGWPYGYGGWGWYNPGPARVQTVVTE

Specific function: Unknown

COG id: COG3065

COG function: function code M; Starvation-inducible outer membrane lipoprotein

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788108, Length=193, Percent_Identity=100, Blast_Score=389, Evalue=1e-110,
Organism=Escherichia coli, GI87082278, Length=179, Percent_Identity=40.2234636871508, Blast_Score=131, Evalue=2e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YEAY_ECOL6 (P0AA92)

Other databases:

- EMBL:   AE014075
- RefSeq:   NP_754104.1
- EnsemblBacteria:   EBESCT00000041975
- GeneID:   1036656
- GenomeReviews:   AE014075_GR
- KEGG:   ecc:c2210
- GeneTree:   EBGT00050000009737
- HOGENOM:   HBG739611
- OMA:   KGTSPTP
- ProtClustDB:   CLSK880213
- InterPro:   IPR004658
- TIGRFAMs:   TIGR00752

Pfam domain/function: PF03843 Slp

EC number: NA

Molecular weight: Translated: 20921; Mature: 20790

Theoretical pI: Translated: 9.91; Mature: 9.91

Prosite motif: PS51257 PROKAR_LIPOPROTEIN; PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVQKNVIKGILAGTFALMLSGCVTVPDAIKGSSPTPQQDLVRVMSAPQLYVGQEARFGG
CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCEEECCCCCCCC
KVVAVQNQQGKTRLEIATVPLDSGARPTLGEPSRGRIYADVNGFLDPVDFRGQLVTVVGP
EEEEEECCCCCEEEEEEEEECCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCEEEEEEEC
ITGAVDGKIGNTPYKFMVMQVTGYKRWHLTQQVIMPPQPIDPWFYGGRGWPYGYGGWGWY
CCCCCCCCCCCCCEEEEEEEECCCEEEECCCEECCCCCCCCCCEECCCCCCCCCCCCCCC
NPGPARVQTVVTE
CCCCCEEEEEECC
>Mature Secondary Structure 
AVQKNVIKGILAGTFALMLSGCVTVPDAIKGSSPTPQQDLVRVMSAPQLYVGQEARFGG
CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCEEECCCCCCCC
KVVAVQNQQGKTRLEIATVPLDSGARPTLGEPSRGRIYADVNGFLDPVDFRGQLVTVVGP
EEEEEECCCCCEEEEEEEEECCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCEEEEEEEC
ITGAVDGKIGNTPYKFMVMQVTGYKRWHLTQQVIMPPQPIDPWFYGGRGWPYGYGGWGWY
CCCCCCCCCCCCCEEEEEEEECCCEEEECCCEECCCCCCCCCCEECCCCCCCCCCCCCCC
NPGPARVQTVVTE
CCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157