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The map label for this gene is quuD [H]

Identifier: 157161035

GI number: 157161035

Start: 1673353

End: 1673730

Strand: Reverse

Name: quuD [H]

Synonym: EcHS_A1649

Alternate gene names: 157161035

Gene position: 1673730-1673353 (Counterclockwise)

Preceding gene: 157161037

Following gene: 157161034

Centisome position: 36.04

GC content: 47.35

Gene sequence:

>378_bases
ATGCGTGATATTCAGATGGTTCTTGAGCGTTGGGGGGCATGGGCGGCTAATAATCATGAAGATGTGACCTGGTCGTCCAT
TGCCGCCGGTTTTAAGGGATTAATTCCTTCAAAAGTAAGATCTCGTCCGCAATGCTGTGACGATGACGCGATGATCATTT
GTGAATGTATGGCTCGCCTGAAAAAAAACAACAGCGATTTACATGATTTATTGGTGGACTATTATGTCGGCGGCATGACT
TTTATGGCGCTTGCACGTAAGCATGGGCGATCTGATTGTTGGGTTGGCAGGATGCTCCAGAAAGCTGAGGGCGTAGTGGA
GGGCATGCTGATGGTGTTGGATCTCCGATTGGAGATGGATGCTGATTGTTCGAAATAA

Upstream 100 bases:

>100_bases
CATTTGAAGAGAAGTATGGCTCCCAACTGGAGCTGATTTTTCGATTTATCGATCGCGCGCTGGCAATTGGTGTGCTGGCC
TAATTTTGTGGAGTAAGTTG

Downstream 100 bases:

>100_bases
TCAAAGGAAAAGTTGCTGTCTGATTTTCATTAGTCTAACATTTTAAATGTTGGAATCGCAACGTAGTTATTATCATATAA
CAGCTTGTTTCCTGATTTAG

Product: phage antitermination Q

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 125; Mature: 125

Protein sequence:

>125_residues
MRDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLIPSKVRSRPQCCDDDAMIICECMARLKKNNSDLHDLLVDYYVGGMT
FMALARKHGRSDCWVGRMLQKAEGVVEGMLMVLDLRLEMDADCSK

Sequences:

>Translated_125_residues
MRDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLIPSKVRSRPQCCDDDAMIICECMARLKKNNSDLHDLLVDYYVGGMT
FMALARKHGRSDCWVGRMLQKAEGVVEGMLMVLDLRLEMDADCSK
>Mature_125_residues
MRDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLIPSKVRSRPQCCDDDAMIICECMARLKKNNSDLHDLLVDYYVGGMT
FMALARKHGRSDCWVGRMLQKAEGVVEGMLMVLDLRLEMDADCSK

Specific function: Positively regulate expression of some phage genes. Bacterial host RNA polymerase modified by antitermination proteins transcribes through termination sites that otherwise prevent expression of the regulated genes [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phage antitermination Q type 1 family [H]

Homologues:

Organism=Escherichia coli, GI1786763, Length=120, Percent_Identity=85.8333333333333, Blast_Score=214, Evalue=1e-57,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010534 [H]

Pfam domain/function: PF06530 Phage_antitermQ [H]

EC number: NA

Molecular weight: Translated: 14143; Mature: 14143

Theoretical pI: Translated: 6.24; Mature: 6.24

Prosite motif: PS00228 TUBULIN_B_AUTOREG

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.8 %Cys     (Translated Protein)
8.0 %Met     (Translated Protein)
12.8 %Cys+Met (Translated Protein)
4.8 %Cys     (Mature Protein)
8.0 %Met     (Mature Protein)
12.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLIPSKVRSRPQCCDDDAMIICECMARL
CCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCHHHCCCCCCCCCCHHHHHHHHHHH
KKNNSDLHDLLVDYYVGGMTFMALARKHGRSDCWVGRMLQKAEGVVEGMLMVLDLRLEMD
HCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
ADCSK
CCCCC
>Mature Secondary Structure
MRDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLIPSKVRSRPQCCDDDAMIICECMARL
CCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCHHHCCCCCCCCCCHHHHHHHHHHH
KKNNSDLHDLLVDYYVGGMTFMALARKHGRSDCWVGRMLQKAEGVVEGMLMVLDLRLEMD
HCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
ADCSK
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8648624; 9278503 [H]