Click here to switch to the map view.

The map label for this gene is cspI [H]

Identifier: 157161028

GI number: 157161028

Start: 1667514

End: 1667729

Strand: Reverse

Name: cspI [H]

Synonym: EcHS_A1642

Alternate gene names: 157161028

Gene position: 1667729-1667514 (Counterclockwise)

Preceding gene: 157161029

Following gene: 157161027

Centisome position: 35.92

GC content: 41.2

Gene sequence:

>216_bases
ATGATGTCTAACAAAATGACTGGTTTAGTGAAATGGTTTAACCCTGAAAAAGGTTTTGGTTTCATCACGCCGAAAGATGG
TAGCAAAGATGTGTTTGTCCATTTCTCAGCTATTCAGAGCAACGATTTCAAAACGTTAACTGAGAATCAGGAAGTCGAAT
TTGGTATTGAGAACGGACCTAAAGGCCCCGCGGCTGTTCATGTTGTGGCACTTTGA

Upstream 100 bases:

>100_bases
TTTATTATTTGTACCTCTTGAGATTTCCTTGTTGGTTTTTCTCTCTGATATTTTTTTTCGGACCATTCTGCCCAAGGGCT
AACTTCTTCAAAAGGTAATA

Downstream 100 bases:

>100_bases
GGTAGAAAATATTACAAACCATATTCACTTTAGATGCCCGTGTTGCCATGGTTCTCAGTATAGAACATCATCTTTTGATG
TTTCTGACAGGAATCCTTTC

Product: cold shock DNA-binding protein

Products: NA

Alternate protein names: CPS-I [H]

Number of amino acids: Translated: 71; Mature: 71

Protein sequence:

>71_residues
MMSNKMTGLVKWFNPEKGFGFITPKDGSKDVFVHFSAIQSNDFKTLTENQEVEFGIENGPKGPAAVHVVAL

Sequences:

>Translated_71_residues
MMSNKMTGLVKWFNPEKGFGFITPKDGSKDVFVHFSAIQSNDFKTLTENQEVEFGIENGPKGPAAVHVVAL
>Mature_71_residues
MMSNKMTGLVKWFNPEKGFGFITPKDGSKDVFVHFSAIQSNDFKTLTENQEVEFGIENGPKGPAAVHVVAL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1787834, Length=70, Percent_Identity=100, Blast_Score=144, Evalue=1e-36,
Organism=Escherichia coli, GI2367114, Length=70, Percent_Identity=78.5714285714286, Blast_Score=119, Evalue=4e-29,
Organism=Escherichia coli, GI1787839, Length=68, Percent_Identity=72.0588235294118, Blast_Score=107, Evalue=2e-25,
Organism=Escherichia coli, GI1789979, Length=70, Percent_Identity=70, Blast_Score=104, Evalue=1e-24,
Organism=Escherichia coli, GI1786841, Length=68, Percent_Identity=72.0588235294118, Blast_Score=102, Evalue=4e-24,
Organism=Escherichia coli, GI1788126, Length=67, Percent_Identity=73.134328358209, Blast_Score=101, Evalue=1e-23,
Organism=Escherichia coli, GI1787107, Length=62, Percent_Identity=50, Blast_Score=71, Evalue=2e-14,
Organism=Escherichia coli, GI1787840, Length=67, Percent_Identity=47.7611940298507, Blast_Score=65, Evalue=7e-13,
Organism=Escherichia coli, GI2367112, Length=67, Percent_Identity=49.2537313432836, Blast_Score=65, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24658520, Length=61, Percent_Identity=49.1803278688525, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7815; Mature: 7815

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMSNKMTGLVKWFNPEKGFGFITPKDGSKDVFVHFSAIQSNDFKTLTENQEVEFGIENGP
CCCCCCEEEEEEECCCCCCEEECCCCCCCEEEEEEEEECCCCCEECCCCCEEEEECCCCC
KGPAAVHVVAL
CCCCEEEEEEC
>Mature Secondary Structure
MMSNKMTGLVKWFNPEKGFGFITPKDGSKDVFVHFSAIQSNDFKTLTENQEVEFGIENGP
CCCCCCEEEEEEECCCCCCEEECCCCCCCEEEEEEEEECCCCCEECCCCCEEEEECCCCC
KGPAAVHVVAL
CCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]