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The map label for this gene is fimD1 [H]

Identifier: 157158761

GI number: 157158761

Start: 4229534

End: 4232053

Strand: Reverse

Name: fimD1 [H]

Synonym: EcE24377A_4241

Alternate gene names: 157158761

Gene position: 4232053-4229534 (Counterclockwise)

Preceding gene: 157155800

Following gene: 157154757

Centisome position: 84.99

GC content: 47.22

Gene sequence:

>2520_bases
ATGACGACCAGAATAGTGGTTGGCCTCACGGCAGGGACGTGTCTGATTTTCTCGCAAAACCTGATGGCCGAGGTCAGTGT
ATTCAATCCGGCGCTTCTGGAAATCGACCATCAATCCGGAGTCGATATTCGCCAGTTTAATCGGGCAAACCTGATGCCCC
CAGGTGTTTATAGCGTTGATATTTTTATCAACGGTAAAATGTTTGAACGTCAGGATGTGACATTTGTTCAGGATAATCCA
GATGCTGATCTGCACGCATGCTTTATTGCCATTAAAAAAACACTGTCCTCCTTTGGCATAAAAGTTGATGCGCTCAAATC
GTTCAATGATGTGGATGAGACGGTTTGCCTCGATCCTGCTCTACGTATTGAAGGCTCATCCTGGCAGTTTGACAGTGATA
AATTGCAGCTGAATATATCCATTCCCCAAATCTACATGGACGCGATGGCTTATGATTACATCAGCCCCACGCGTTGGGAT
GAGGGGATTAACGCGCTCACCATCAACTACGATTTTTCTGGTTCACATACACTACGTTCAGATTATGGTTCACAAGAGAC
AGATACCAGTTATCTCAATCTGCGCAATGGACTGAATATTGGACCGTGGCGGCTACGTAATTACAGTACTTTAAACACCA
GCGATGGCCGTGCGGAATACAACTCCATTAGTACCTGGATACAGCGCGATATTGCCGCGTTAAGAAGCCAGATTATGATT
GGTGATACGTGGACGGCGAGCGATATTTTCGACAGTACGCAAATTCGCGGCGCGCGTTTGTATACTGATAACGATATGCT
ACCCGCCAGCCAGAATGGCTTTGCTCCTGTGGTTCGTGGGATTGCAAAGTCCAACGCCACCGTCATCATTCGGCAGAATG
GCTACGTGATTTATCAGTCTGCCGTTCCACAAGGTGCTTTTGAGATCACCGATCTCAACACCGCCAGTACAGGTGGCGAT
TTGGACGTAACCATCAAAGAAGAAGACGGTAGCGAACAACGATTCACCCAACCTTATGCTTCATTGGCGATTCTTAAACG
TGAAGGTCAGACAGATGTTGATGTCAGCGTGGGTGAATTGCGCGATGAAGACGGATTTACACCGGACGTCCTTCAGGCGC
AAATACTTCATGGTTTTTCCCACGGGATCACTTTATATGGAGGTATGCAGGCTGCTGAAAATTATGGTTCTGCAGCTCTG
GGTGTCGGTAAAGATCTTGGCGCTTTGGGCGCAATTTCTTTCGATGTGACACATGCTCGTGCGAATTTTAGCCATGATGA
TACAGAAACGGGTCAGTCATATCGCTTTCTCTATTCAAAACGATTTGACGACACAGACACTAGCTTGCGCCTGGTTGGCT
ATCGTTACTCCACCGAGGGCTACTATACCCTCAATGAGTGGGCATCGCGGCGCAACAGCCCTGAAGACTTTTGGGAAACA
GGTAACCGACGTAGTCGCGTGGAGGGAACGCTAACGCAGTCGTTGGGGAGAGATTATGGCAATTTATACCTGACATTAAG
CCGGCAACAATACTGGCATACCGATGATGTCGAACGATTAATGCAATTTGGCTACAGCAGTAGCTGGAAGCGTCTCTCGT
GGAACGTCTCCTGGAGTTATTCCAATACTGCCAGACAGGGGACGGGGAACAACCATGCCAGTGATAACACCAGTGAGCAG
ATCTACATGCTCTCTTTATCTGTTCCTTTATCGGGCTGGTGGGGTAATAGTTACGCCACCTATTCTGTTTCGCAAAACGA
TAATTCCGGTAGCTCACATCAACTCGGACTCAGCGGTACGGCGCTGGAAAGAAATAACCTTTCATGGAATTTAATGCAGT
CCTATAACAGTCATGATGATGAGGTTGGCGGTAATATGTCCCTGACCTATGATGGCTCTTATGGCACGGTGAACGGCAGC
TATAACTACAGCCAAAATTCCCAGAGGCTGAATTATGGTATCAGAGGGGGAATTCTGGCACACAGCGAAGGGGTAACGTT
AAGTCAGGAGTTAGGTGAAACTATTGCTCTTGTTAAAGCACCTGGGGCCGCCGGGTTAGAAATAGATAATATGCGCGGTG
CTGCGACGGACTGGCGCGGCTATACGGTCAAGACACAGCTAAACCCTTATGATGAAAATCGGGTAGCAATCAGCGATAAC
TATTTCTCGAAGTCGAATATAGAACTTGATAATACCGTCGTTACGATGGTTCCCACGCGTGGTGCAGTGGTTAAAGCGGA
GTTTGTGACTCATGTGGGTTATCGCGTTCTCTTCAGAGTGTTAAATGCAAATGGTAAACCGGTACCTTTTGGAGCCATTG
CTGCGATACAAGATGCAAGTTTGGCAGATTCAGGAATTGTCGGTGACCGTGGCGAACTTTATCTTTCTGGTCTACCAGAA
AAAGGACAGGTTACGTTATCCTGGGGAGAAAACGCCTCAACAAAATGCATCTTCAATTATTCACTTTCGACACCAGAAAG
TGAGAGCGGATTAATTGAACAGGGTGTGACATGTCATTAA

Upstream 100 bases:

>100_bases
GGGAGGCCAAATGACCTGGCGATTTATTAATGATTACGGCGCAGTCAGTGACCCGATAAAAATGACGCTGTAAGCAAGGG
ATAAGGATAGGCGTATTATG

Downstream 100 bases:

>100_bases
AAGGATTTTTATGAACAAGTATATCAAACAGTGGTGCTTTGCTGTGTTTATGCTCTCGTTAAGTAGTGTAGCACTTGCAG
CTCCTAAAGGTATCTGTACC

Product: outer membrane usher protein FimD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 839; Mature: 838

Protein sequence:

>839_residues
MTTRIVVGLTAGTCLIFSQNLMAEVSVFNPALLEIDHQSGVDIRQFNRANLMPPGVYSVDIFINGKMFERQDVTFVQDNP
DADLHACFIAIKKTLSSFGIKVDALKSFNDVDETVCLDPALRIEGSSWQFDSDKLQLNISIPQIYMDAMAYDYISPTRWD
EGINALTINYDFSGSHTLRSDYGSQETDTSYLNLRNGLNIGPWRLRNYSTLNTSDGRAEYNSISTWIQRDIAALRSQIMI
GDTWTASDIFDSTQIRGARLYTDNDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQSAVPQGAFEITDLNTASTGGD
LDVTIKEEDGSEQRFTQPYASLAILKREGQTDVDVSVGELRDEDGFTPDVLQAQILHGFSHGITLYGGMQAAENYGSAAL
GVGKDLGALGAISFDVTHARANFSHDDTETGQSYRFLYSKRFDDTDTSLRLVGYRYSTEGYYTLNEWASRRNSPEDFWET
GNRRSRVEGTLTQSLGRDYGNLYLTLSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSWSYSNTARQGTGNNHASDNTSEQ
IYMLSLSVPLSGWWGNSYATYSVSQNDNSGSSHQLGLSGTALERNNLSWNLMQSYNSHDDEVGGNMSLTYDGSYGTVNGS
YNYSQNSQRLNYGIRGGILAHSEGVTLSQELGETIALVKAPGAAGLEIDNMRGAATDWRGYTVKTQLNPYDENRVAISDN
YFSKSNIELDNTVVTMVPTRGAVVKAEFVTHVGYRVLFRVLNANGKPVPFGAIAAIQDASLADSGIVGDRGELYLSGLPE
KGQVTLSWGENASTKCIFNYSLSTPESESGLIEQGVTCH

Sequences:

>Translated_839_residues
MTTRIVVGLTAGTCLIFSQNLMAEVSVFNPALLEIDHQSGVDIRQFNRANLMPPGVYSVDIFINGKMFERQDVTFVQDNP
DADLHACFIAIKKTLSSFGIKVDALKSFNDVDETVCLDPALRIEGSSWQFDSDKLQLNISIPQIYMDAMAYDYISPTRWD
EGINALTINYDFSGSHTLRSDYGSQETDTSYLNLRNGLNIGPWRLRNYSTLNTSDGRAEYNSISTWIQRDIAALRSQIMI
GDTWTASDIFDSTQIRGARLYTDNDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQSAVPQGAFEITDLNTASTGGD
LDVTIKEEDGSEQRFTQPYASLAILKREGQTDVDVSVGELRDEDGFTPDVLQAQILHGFSHGITLYGGMQAAENYGSAAL
GVGKDLGALGAISFDVTHARANFSHDDTETGQSYRFLYSKRFDDTDTSLRLVGYRYSTEGYYTLNEWASRRNSPEDFWET
GNRRSRVEGTLTQSLGRDYGNLYLTLSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSWSYSNTARQGTGNNHASDNTSEQ
IYMLSLSVPLSGWWGNSYATYSVSQNDNSGSSHQLGLSGTALERNNLSWNLMQSYNSHDDEVGGNMSLTYDGSYGTVNGS
YNYSQNSQRLNYGIRGGILAHSEGVTLSQELGETIALVKAPGAAGLEIDNMRGAATDWRGYTVKTQLNPYDENRVAISDN
YFSKSNIELDNTVVTMVPTRGAVVKAEFVTHVGYRVLFRVLNANGKPVPFGAIAAIQDASLADSGIVGDRGELYLSGLPE
KGQVTLSWGENASTKCIFNYSLSTPESESGLIEQGVTCH
>Mature_838_residues
TTRIVVGLTAGTCLIFSQNLMAEVSVFNPALLEIDHQSGVDIRQFNRANLMPPGVYSVDIFINGKMFERQDVTFVQDNPD
ADLHACFIAIKKTLSSFGIKVDALKSFNDVDETVCLDPALRIEGSSWQFDSDKLQLNISIPQIYMDAMAYDYISPTRWDE
GINALTINYDFSGSHTLRSDYGSQETDTSYLNLRNGLNIGPWRLRNYSTLNTSDGRAEYNSISTWIQRDIAALRSQIMIG
DTWTASDIFDSTQIRGARLYTDNDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQSAVPQGAFEITDLNTASTGGDL
DVTIKEEDGSEQRFTQPYASLAILKREGQTDVDVSVGELRDEDGFTPDVLQAQILHGFSHGITLYGGMQAAENYGSAALG
VGKDLGALGAISFDVTHARANFSHDDTETGQSYRFLYSKRFDDTDTSLRLVGYRYSTEGYYTLNEWASRRNSPEDFWETG
NRRSRVEGTLTQSLGRDYGNLYLTLSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSWSYSNTARQGTGNNHASDNTSEQI
YMLSLSVPLSGWWGNSYATYSVSQNDNSGSSHQLGLSGTALERNNLSWNLMQSYNSHDDEVGGNMSLTYDGSYGTVNGSY
NYSQNSQRLNYGIRGGILAHSEGVTLSQELGETIALVKAPGAAGLEIDNMRGAATDWRGYTVKTQLNPYDENRVAISDNY
FSKSNIELDNTVVTMVPTRGAVVKAEFVTHVGYRVLFRVLNANGKPVPFGAIAAIQDASLADSGIVGDRGELYLSGLPEK
GQVTLSWGENASTKCIFNYSLSTPESESGLIEQGVTCH

Specific function: Involved in the export and assembly of lpfA fimbrial subunits across the outer membrane [H]

COG id: COG3188

COG function: function code NU; P pilus assembly protein, porin PapC

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial export usher family [H]

Homologues:

Organism=Escherichia coli, GI1787172, Length=866, Percent_Identity=39.838337182448, Blast_Score=615, Evalue=1e-177,
Organism=Escherichia coli, GI1790772, Length=868, Percent_Identity=39.2857142857143, Blast_Score=599, Evalue=1e-172,
Organism=Escherichia coli, GI1786744, Length=873, Percent_Identity=36.8843069873998, Blast_Score=566, Evalue=1e-162,
Organism=Escherichia coli, GI1789533, Length=842, Percent_Identity=38.479809976247, Blast_Score=532, Evalue=1e-152,
Organism=Escherichia coli, GI1786332, Length=862, Percent_Identity=33.2946635730858, Blast_Score=408, Evalue=1e-115,
Organism=Escherichia coli, GI1788427, Length=804, Percent_Identity=30.2238805970149, Blast_Score=347, Evalue=2e-96,
Organism=Escherichia coli, GI87081778, Length=854, Percent_Identity=27.9859484777518, Blast_Score=258, Evalue=8e-70,
Organism=Escherichia coli, GI1789610, Length=749, Percent_Identity=24.1655540720961, Blast_Score=126, Evalue=5e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000015
- InterPro:   IPR018030 [H]

Pfam domain/function: PF00577 Usher [H]

EC number: NA

Molecular weight: Translated: 92693; Mature: 92562

Theoretical pI: Translated: 4.58; Mature: 4.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTRIVVGLTAGTCLIFSQNLMAEVSVFNPALLEIDHQSGVDIRQFNRANLMPPGVYSVD
CCCEEEEEECCCEEEEEECCHHEEEEECCCEEEEEECCCCCCHHHCCCCCCCCCCCEEEE
IFINGKMFERQDVTFVQDNPDADLHACFIAIKKTLSSFGIKVDALKSFNDVDETVCLDPA
EEECCEEECCCCCEEEECCCCCHHHHHHHHHHHHHHHHCEEEEHHHCCCCCCCEEECCCC
LRIEGSSWQFDSDKLQLNISIPQIYMDAMAYDYISPTRWDEGINALTINYDFSGSHTLRS
EEECCCCCEECCCEEEEEEECHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCEEHH
DYGSQETDTSYLNLRNGLNIGPWRLRNYSTLNTSDGRAEYNSISTWIQRDIAALRSQIMI
CCCCCCCCCCEEEECCCCCCCCEEECCCEEECCCCCCCHHHHHHHHHHHHHHHHHCEEEE
GDTWTASDIFDSTQIRGARLYTDNDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQS
CCCCCHHHHCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCEEEEEC
AVPQGAFEITDLNTASTGGDLDVTIKEEDGSEQRFTQPYASLAILKREGQTDVDVSVGEL
CCCCCCEEEEECCCCCCCCCEEEEEECCCCCCHHHHCHHHHEEEEECCCCCCCEEEHHCC
RDEDGFTPDVLQAQILHGFSHGITLYGGMQAAENYGSAALGVGKDLGALGAISFDVTHAR
CCCCCCCHHHHHHHHHHHHCCCEEEEECHHHHHCCCCEEECCCCCCCCCEEEEEEEEEEE
ANFSHDDTETGQSYRFLYSKRFDDTDTSLRLVGYRYSTEGYYTLNEWASRRNSPEDFWET
CCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEEEECCCCEEEHHHHHHCCCCCHHHHHC
GNRRSRVEGTLTQSLGRDYGNLYLTLSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSWSY
CCCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEEEEEEE
SNTARQGTGNNHASDNTSEQIYMLSLSVPLSGWWGNSYATYSVSQNDNSGSSHQLGLSGT
CCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCEEEEEECCCCCCCCCEEECCCCC
ALERNNLSWNLMQSYNSHDDEVGGNMSLTYDGSYGTVNGSYNYSQNSQRLNYGIRGGILA
EEECCCCCEEEHHHCCCCCCCCCCCEEEEECCCCEEECCCCCCCCCCCEEECCCCCCEEE
HSEGVTLSQELGETIALVKAPGAAGLEIDNMRGAATDWRGYTVKTQLNPYDENRVAISDN
ECCCCEEHHHHCCEEEEEECCCCCCCEECCCCCCCCCCCCEEEEEECCCCCCCEEEEECC
YFSKSNIELDNTVVTMVPTRGAVVKAEFVTHVGYRVLFRVLNANGKPVPFGAIAAIQDAS
CCCCCCCEECCEEEEEECCCCCEEEHHHHHHHHHHHHHHHHCCCCCCCCCHHHEEECCCC
LADSGIVGDRGELYLSGLPEKGQVTLSWGENASTKCIFNYSLSTPESESGLIEQGVTCH
CCCCCCCCCCCCEEEECCCCCCEEEEEECCCCCCEEEEEEECCCCCCCCCHHHCCCCCC
>Mature Secondary Structure 
TTRIVVGLTAGTCLIFSQNLMAEVSVFNPALLEIDHQSGVDIRQFNRANLMPPGVYSVD
CCEEEEEECCCEEEEEECCHHEEEEECCCEEEEEECCCCCCHHHCCCCCCCCCCCEEEE
IFINGKMFERQDVTFVQDNPDADLHACFIAIKKTLSSFGIKVDALKSFNDVDETVCLDPA
EEECCEEECCCCCEEEECCCCCHHHHHHHHHHHHHHHHCEEEEHHHCCCCCCCEEECCCC
LRIEGSSWQFDSDKLQLNISIPQIYMDAMAYDYISPTRWDEGINALTINYDFSGSHTLRS
EEECCCCCEECCCEEEEEEECHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCEEHH
DYGSQETDTSYLNLRNGLNIGPWRLRNYSTLNTSDGRAEYNSISTWIQRDIAALRSQIMI
CCCCCCCCCCEEEECCCCCCCCEEECCCEEECCCCCCCHHHHHHHHHHHHHHHHHCEEEE
GDTWTASDIFDSTQIRGARLYTDNDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQS
CCCCCHHHHCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCEEEEEC
AVPQGAFEITDLNTASTGGDLDVTIKEEDGSEQRFTQPYASLAILKREGQTDVDVSVGEL
CCCCCCEEEEECCCCCCCCCEEEEEECCCCCCHHHHCHHHHEEEEECCCCCCCEEEHHCC
RDEDGFTPDVLQAQILHGFSHGITLYGGMQAAENYGSAALGVGKDLGALGAISFDVTHAR
CCCCCCCHHHHHHHHHHHHCCCEEEEECHHHHHCCCCEEECCCCCCCCCEEEEEEEEEEE
ANFSHDDTETGQSYRFLYSKRFDDTDTSLRLVGYRYSTEGYYTLNEWASRRNSPEDFWET
CCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEEEECCCCEEEHHHHHHCCCCCHHHHHC
GNRRSRVEGTLTQSLGRDYGNLYLTLSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSWSY
CCCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEEEEEEE
SNTARQGTGNNHASDNTSEQIYMLSLSVPLSGWWGNSYATYSVSQNDNSGSSHQLGLSGT
CCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCEEEEEECCCCCCCCCEEECCCCC
ALERNNLSWNLMQSYNSHDDEVGGNMSLTYDGSYGTVNGSYNYSQNSQRLNYGIRGGILA
EEECCCCCEEEHHHCCCCCCCCCCCEEEEECCCCEEECCCCCCCCCCCEEECCCCCCEEE
HSEGVTLSQELGETIALVKAPGAAGLEIDNMRGAATDWRGYTVKTQLNPYDENRVAISDN
ECCCCEEHHHHCCEEEEEECCCCCCCEECCCCCCCCCCCCEEEEEECCCCCCCEEEEECC
YFSKSNIELDNTVVTMVPTRGAVVKAEFVTHVGYRVLFRVLNANGKPVPFGAIAAIQDAS
CCCCCCCEECCEEEEEECCCCCEEEHHHHHHHHHHHHHHHHCCCCCCCCCHHHEEECCCC
LADSGIVGDRGELYLSGLPEKGQVTLSWGENASTKCIFNYSLSTPESESGLIEQGVTCH
CCCCCCCCCCCCEEEECCCCCCEEEEEECCCCCCEEEEEEECCCCCCCCCHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7721701; 11677609 [H]