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The map label for this gene is stpA [H]

Identifier: 157158739

GI number: 157158739

Start: 3409199

End: 3409633

Strand: Reverse

Name: stpA [H]

Synonym: EcE24377A_3387

Alternate gene names: 157158739

Gene position: 3409633-3409199 (Counterclockwise)

Preceding gene: 157156712

Following gene: 157159321

Centisome position: 68.47

GC content: 36.09

Gene sequence:

>435_bases
ATGAGTAAGAAGAAAATTCCTTTTGAAAATGAAGAGTTCATTACTTACCGGGCATTACTTCTGAGTATTGACTTTGTTAA
AAAACTGGTTATAGAAATGTCTGATGAAGATTTAAATAAGGTTAAGGAAAACTTTGACATAGCTATTCAGCAACGTAATG
AGCGAAAGGAAAATATGAAAGCTATCAAATCACTCATGGATGAACATGGTATATCTCTGGAAGATTTTTATTGTGAATTT
GGCAAAAAATCACAGGCAGGCAGAAAAAGTGTGTCAGGAGGGCATAAATACGAGTATGACGATAACGGTAAAAGAATGTA
CTGGAATGGACAAGGACGTCGGCCTAAGGCCATAGCAGAGGCTATAAAAGCCGGAGGTTCTCTTGATGATTTTCTTATAT
CTCAGGAAGTATCATCTGGTCCTGATTATGAATAA

Upstream 100 bases:

>100_bases
GTGACGATTAAGTACCGAAAAATGTGATACACATATTATTTTTATGGTGAATCACCTGATAGGATTTGCCATAAATGAAT
GAAAAGCTGAGTGTTAATAA

Downstream 100 bases:

>100_bases
CAGCAATATATATTTTGATCTGTATTAATATCAAGGAATATATAGTAAACACTTCTCCGGAGTTGATATATTATCGGCAG
GGAATGAAAATGCCTGACTT

Product: DNA-binding protein H-NS-like protein

Products: NA

Alternate protein names: H-NS homolog stpA [H]

Number of amino acids: Translated: 144; Mature: 143

Protein sequence:

>144_residues
MSKKKIPFENEEFITYRALLLSIDFVKKLVIEMSDEDLNKVKENFDIAIQQRNERKENMKAIKSLMDEHGISLEDFYCEF
GKKSQAGRKSVSGGHKYEYDDNGKRMYWNGQGRRPKAIAEAIKAGGSLDDFLISQEVSSGPDYE

Sequences:

>Translated_144_residues
MSKKKIPFENEEFITYRALLLSIDFVKKLVIEMSDEDLNKVKENFDIAIQQRNERKENMKAIKSLMDEHGISLEDFYCEF
GKKSQAGRKSVSGGHKYEYDDNGKRMYWNGQGRRPKAIAEAIKAGGSLDDFLISQEVSSGPDYE
>Mature_143_residues
SKKKIPFENEEFITYRALLLSIDFVKKLVIEMSDEDLNKVKENFDIAIQQRNERKENMKAIKSLMDEHGISLEDFYCEFG
KKSQAGRKSVSGGHKYEYDDNGKRMYWNGQGRRPKAIAEAIKAGGSLDDFLISQEVSSGPDYE

Specific function: It may act in a fashion similar to H-NS proteins [H]

COG id: COG2916

COG function: function code R; DNA-binding protein H-NS

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the histone-like protein H-NS family [H]

Homologues:

Organism=Escherichia coli, GI1789023, Length=82, Percent_Identity=41.4634146341463, Blast_Score=60, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001801 [H]

Pfam domain/function: PF00816 Histone_HNS [H]

EC number: NA

Molecular weight: Translated: 16554; Mature: 16423

Theoretical pI: Translated: 5.86; Mature: 5.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKKKIPFENEEFITYRALLLSIDFVKKLVIEMSDEDLNKVKENFDIAIQQRNERKENMK
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
AIKSLMDEHGISLEDFYCEFGKKSQAGRKSVSGGHKYEYDDNGKRMYWNGQGRRPKAIAE
HHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHH
AIKAGGSLDDFLISQEVSSGPDYE
HHHCCCCHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SKKKIPFENEEFITYRALLLSIDFVKKLVIEMSDEDLNKVKENFDIAIQQRNERKENMK
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
AIKSLMDEHGISLEDFYCEFGKKSQAGRKSVSGGHKYEYDDNGKRMYWNGQGRRPKAIAE
HHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHH
AIKAGGSLDDFLISQEVSSGPDYE
HHHCCCCHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]