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The map label for this gene is ybcK [H]

Identifier: 157158350

GI number: 157158350

Start: 1412677

End: 1414197

Strand: Reverse

Name: ybcK [H]

Synonym: EcE24377A_1409

Alternate gene names: 157158350

Gene position: 1414197-1412677 (Counterclockwise)

Preceding gene: 157155297

Following gene: 157157428

Centisome position: 28.4

GC content: 44.25

Gene sequence:

>1521_bases
ATGAGAAGTGTAATAACATACTTGAGATTCTCATCAGCCATACAAGGCGCTGAAGGTGCAGATTCAACCAGACGACAAAA
TGACCTGTTCAAGCAATGGTTGAAGAAGAATAGCGATGCTCAAGTAGTAGCGTCTTTCAGTGATGAAGGGTTGAGTGGTT
ACAAAGGTAAGCATCTTACTGGTCAGTTTGGTGACATGTTAGCCCGTATTGAGTCTGGGGAGTTTCCAGAAGGTACACTT
CTGTTAGTCGAAGCTATCGACCGCATAGGCCGCCTTGAACATCTTGAAACAGAAGCCTTGATGAATCGCATTATTGCTCA
TGGTATCGAGATTCACACTCTACAGGATGGGCTAATCTACACAAGGGATGCTCTATCCGATGATTTAGGAATCTCAATCA
TCCAGCGCGTTAAAAGCTACGTAGCTCATCAAGAGTCTAAGCAGAAGTCTTTCCGTGTTAGCCAGAAGTGGAAACAACGT
GCAAAGCTTGCCCTTGCTGGTGAACAACGTTTAACAAAGATGGTTCCCGGATGGATTGACCCCGATACTTTTAAACTCAA
TGAACACGCTGAGACTGTAAGACTGATTTTCAAGCTGCTGCTAAGTGGTGAAAGTCTGCATAACATCGCCCGTCACCTAC
AGGCTAATAACATTAGTTCATTCTCACGGCGTAAAGATGCTAACGGGTTCAGTGTTCACAGTGTTCGTACTGTTTTACGC
TCTGAGTCAGTGATAGGGACACTACCAGCATCACAGCGCAATGACCGCCCCGCTATACCGAACTACTACGAAGCCGCTAT
AGATGCTTCAACGTTCAATAAAGCTCAAGAAATCCTCGATAAAAATCGTAAAGGTCGCACACCTGCAAGTGATAACCCAT
TAACGATTAACATCTTCAAGGGATTATTCCGGTGTCAGTGTGGGGCTAGTGTTCACCCTACAGGGACTAAGAATAAGTAT
GCAGGGGTTTACAGGTGCAATAACAATCCTGACGGTCGCTGTGATGTTCCACCGTTGAAGCGTAAACCGTTTGATAAGTG
GATGATTGATAATTTTCTGGGGATGATTGACGTGGGGAATGATGGAGAAGCAGAGGGGAAGATTGCATCTCTACAGCATG
AGGTTGAAATTGTCACAACCAGAATCAAGAAAGCTACCGCCCTACTTCTTGAGATGGATGATATTACAGAGTTGAAAGCA
CAGGTGAAGGAACTGAACCAGAAGCGCACAGAACTACAGACCACGATTGATAGCATGAGGCGTAAAACTTCACTCAGTGA
CAAGGGATTACCCCAACTCAAAGACATTGACCTTATGACTAAAGCGGGTCGTGTTGAGTGTCAGTTGATTCTGTCCAAGC
ATCTAAAAGGGCTTACATTGGGTAAGGATTCGGTAACTGTAACGCTACAGAACGACACTGAAATAATTGTTCCTACAGAC
CCGCTACCTCTAAATGATGGAACATCTATCTTTGAAATTGCTGAAAAAGAGCTACTAGAAATAGACGCTTATCAACTGTA
G

Upstream 100 bases:

>100_bases
CAAGGGTCATTGTATTGTAGCTATTCGGCATTGTAGCATTAGCCATAACGTTTATAAGTTCATCTTTAAATGATAATCAA
TTGCATGAGAGTTTATCACC

Downstream 100 bases:

>100_bases
CAATCAGGGGCTATGAAGCCCCTTTTTATGTCTCAATAAGTGCCCTTCTTGTTCGGATTCACAGAAAACTTCCGTAAAGC
ATTACCCGACTTGAGTACCT

Product: putative recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 506; Mature: 506

Protein sequence:

>506_residues
MRSVITYLRFSSAIQGAEGADSTRRQNDLFKQWLKKNSDAQVVASFSDEGLSGYKGKHLTGQFGDMLARIESGEFPEGTL
LLVEAIDRIGRLEHLETEALMNRIIAHGIEIHTLQDGLIYTRDALSDDLGISIIQRVKSYVAHQESKQKSFRVSQKWKQR
AKLALAGEQRLTKMVPGWIDPDTFKLNEHAETVRLIFKLLLSGESLHNIARHLQANNISSFSRRKDANGFSVHSVRTVLR
SESVIGTLPASQRNDRPAIPNYYEAAIDASTFNKAQEILDKNRKGRTPASDNPLTINIFKGLFRCQCGASVHPTGTKNKY
AGVYRCNNNPDGRCDVPPLKRKPFDKWMIDNFLGMIDVGNDGEAEGKIASLQHEVEIVTTRIKKATALLLEMDDITELKA
QVKELNQKRTELQTTIDSMRRKTSLSDKGLPQLKDIDLMTKAGRVECQLILSKHLKGLTLGKDSVTVTLQNDTEIIVPTD
PLPLNDGTSIFEIAEKELLEIDAYQL

Sequences:

>Translated_506_residues
MRSVITYLRFSSAIQGAEGADSTRRQNDLFKQWLKKNSDAQVVASFSDEGLSGYKGKHLTGQFGDMLARIESGEFPEGTL
LLVEAIDRIGRLEHLETEALMNRIIAHGIEIHTLQDGLIYTRDALSDDLGISIIQRVKSYVAHQESKQKSFRVSQKWKQR
AKLALAGEQRLTKMVPGWIDPDTFKLNEHAETVRLIFKLLLSGESLHNIARHLQANNISSFSRRKDANGFSVHSVRTVLR
SESVIGTLPASQRNDRPAIPNYYEAAIDASTFNKAQEILDKNRKGRTPASDNPLTINIFKGLFRCQCGASVHPTGTKNKY
AGVYRCNNNPDGRCDVPPLKRKPFDKWMIDNFLGMIDVGNDGEAEGKIASLQHEVEIVTTRIKKATALLLEMDDITELKA
QVKELNQKRTELQTTIDSMRRKTSLSDKGLPQLKDIDLMTKAGRVECQLILSKHLKGLTLGKDSVTVTLQNDTEIIVPTD
PLPLNDGTSIFEIAEKELLEIDAYQL
>Mature_506_residues
MRSVITYLRFSSAIQGAEGADSTRRQNDLFKQWLKKNSDAQVVASFSDEGLSGYKGKHLTGQFGDMLARIESGEFPEGTL
LLVEAIDRIGRLEHLETEALMNRIIAHGIEIHTLQDGLIYTRDALSDDLGISIIQRVKSYVAHQESKQKSFRVSQKWKQR
AKLALAGEQRLTKMVPGWIDPDTFKLNEHAETVRLIFKLLLSGESLHNIARHLQANNISSFSRRKDANGFSVHSVRTVLR
SESVIGTLPASQRNDRPAIPNYYEAAIDASTFNKAQEILDKNRKGRTPASDNPLTINIFKGLFRCQCGASVHPTGTKNKY
AGVYRCNNNPDGRCDVPPLKRKPFDKWMIDNFLGMIDVGNDGEAEGKIASLQHEVEIVTTRIKKATALLLEMDDITELKA
QVKELNQKRTELQTTIDSMRRKTSLSDKGLPQLKDIDLMTKAGRVECQLILSKHLKGLTLGKDSVTVTLQNDTEIIVPTD
PLPLNDGTSIFEIAEKELLEIDAYQL

Specific function: Unknown

COG id: COG1961

COG function: function code L; Site-specific recombinases, DNA invertase Pin homologs

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 recombinase domain [H]

Homologues:

Organism=Escherichia coli, GI1786756, Length=514, Percent_Identity=30.5447470817121, Blast_Score=182, Evalue=6e-47,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011109
- InterPro:   IPR006119 [H]

Pfam domain/function: PF07508 Recombinase; PF00239 Resolvase [H]

EC number: NA

Molecular weight: Translated: 56636; Mature: 56636

Theoretical pI: Translated: 8.66; Mature: 8.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSVITYLRFSSAIQGAEGADSTRRQNDLFKQWLKKNSDAQVVASFSDEGLSGYKGKHLT
CCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCC
GQFGDMLARIESGEFPEGTLLLVEAIDRIGRLEHLETEALMNRIIAHGIEIHTLQDGLIY
CHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCEE
TRDALSDDLGISIIQRVKSYVAHQESKQKSFRVSQKWKQRAKLALAGEQRLTKMVPGWID
EHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PDTFKLNEHAETVRLIFKLLLSGESLHNIARHLQANNISSFSRRKDANGFSVHSVRTVLR
CCCEEECHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHHH
SESVIGTLPASQRNDRPAIPNYYEAAIDASTFNKAQEILDKNRKGRTPASDNPLTINIFK
CCCCEEECCCCCCCCCCCCCCHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCCEEEHHHH
GLFRCQCGASVHPTGTKNKYAGVYRCNNNPDGRCDVPPLKRKPFDKWMIDNFLGMIDVGN
HHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHCEEECCC
DGEAEGKIASLQHEVEIVTTRIKKATALLLEMDDITELKAQVKELNQKRTELQTTIDSMR
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RKTSLSDKGLPQLKDIDLMTKAGRVECQLILSKHLKGLTLGKDSVTVTLQNDTEIIVPTD
HHHCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHCCCEEECCCCEEEEEECCCEEEECCC
PLPLNDGTSIFEIAEKELLEIDAYQL
CCCCCCCCHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MRSVITYLRFSSAIQGAEGADSTRRQNDLFKQWLKKNSDAQVVASFSDEGLSGYKGKHLT
CCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCC
GQFGDMLARIESGEFPEGTLLLVEAIDRIGRLEHLETEALMNRIIAHGIEIHTLQDGLIY
CHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCEE
TRDALSDDLGISIIQRVKSYVAHQESKQKSFRVSQKWKQRAKLALAGEQRLTKMVPGWID
EHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PDTFKLNEHAETVRLIFKLLLSGESLHNIARHLQANNISSFSRRKDANGFSVHSVRTVLR
CCCEEECHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHHH
SESVIGTLPASQRNDRPAIPNYYEAAIDASTFNKAQEILDKNRKGRTPASDNPLTINIFK
CCCCEEECCCCCCCCCCCCCCHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCCEEEHHHH
GLFRCQCGASVHPTGTKNKYAGVYRCNNNPDGRCDVPPLKRKPFDKWMIDNFLGMIDVGN
HHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHCEEECCC
DGEAEGKIASLQHEVEIVTTRIKKATALLLEMDDITELKAQVKELNQKRTELQTTIDSMR
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RKTSLSDKGLPQLKDIDLMTKAGRVECQLILSKHLKGLTLGKDSVTVTLQNDTEIIVPTD
HHHCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHCCCEEECCCCEEEEEECCCEEEECCC
PLPLNDGTSIFEIAEKELLEIDAYQL
CCCCCCCCHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]