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The map label for this gene is ydhX [H]

Identifier: 157157694

GI number: 157157694

Start: 1876163

End: 1876882

Strand: Reverse

Name: ydhX [H]

Synonym: EcE24377A_1886

Alternate gene names: 157157694

Gene position: 1876882-1876163 (Counterclockwise)

Preceding gene: 157155753

Following gene: 157156596

Centisome position: 37.69

GC content: 50.14

Gene sequence:

>720_bases
ATGTCATGGATAGGGTGGACAGTTGCAGCCACTGCATTAGGGGATAATCAGATGTCCTTCACTCGACGCAAATTTGTTCT
GGGGATGGGAACAGTAATCTTTTTTACTGGTTCTGCGTCTTCTCTGTTAGCGAACACGAGGCAAGAAAAGGAAGTTCGGT
ATGCCATGATTCATGACGAGTCACGGTGCAATGGCTGTAATATTTGCGCCCGCGCATGCCGTAAAACTAACCACGTCCCC
GCTCAGGGAAGCCGTTTATCGATAGCACACATTCCAGTCACCGATAACGACAACGAAACGCAGTATCACTTTTTTCGCCA
GTCATGTCAGCACTGCGAAGATGCTCCGTGCATCGACGTATGCCCGACAGGGGCGTCGTGGCGTGATGAGCAGGGGATCG
TGCGGGTAGAAAAATCGCAGTGCATCGGCTGCAGTTATTGCATTGGCGCTTGTCCGTACCAGGTTCGCTACCTTAACCCT
GTCACTAAAGTGGCAGATAAATGTGATTTCTGCGCTGAGTCCCGACTGGCAAAAGGCTTTCCGCCCATTTGCGTCAGCGC
CTGCCCGGAACACGCATTGATCTTTGGTCGCGAAGATAGCCCAGAAATTCAGGCGTGGTTGCAGCAAAATAAATACTATC
AATATCAGCTACCTGGTGCCGGGAAACCGCATCTGTATCGCCGGTTCGGTCAACATTTGATTAAAAAGGAAAATGTATGA

Upstream 100 bases:

>100_bases
GTACTTGTTTAGCGAGCGATTTATGACCTATGGCAAGGCTTATGGCTTATGCGAATGGTTCGAGGTAGAGCAGTTTCAGA
ACCCCTGAAATTTCAGGGAG

Downstream 100 bases:

>100_bases
ACCCGTCGCAACATGCTGAACAGTTTCAGAGCCAGTTAGCGAACTATGTGCCACAGTTCACTCCCGAATTTTGGCCGGTG
TGGTTGATCATTGCCGGAGT

Product: iron-sulfur cluster-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 239; Mature: 238

Protein sequence:

>239_residues
MSWIGWTVAATALGDNQMSFTRRKFVLGMGTVIFFTGSASSLLANTRQEKEVRYAMIHDESRCNGCNICARACRKTNHVP
AQGSRLSIAHIPVTDNDNETQYHFFRQSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQVRYLNP
VTKVADKCDFCAESRLAKGFPPICVSACPEHALIFGREDSPEIQAWLQQNKYYQYQLPGAGKPHLYRRFGQHLIKKENV

Sequences:

>Translated_239_residues
MSWIGWTVAATALGDNQMSFTRRKFVLGMGTVIFFTGSASSLLANTRQEKEVRYAMIHDESRCNGCNICARACRKTNHVP
AQGSRLSIAHIPVTDNDNETQYHFFRQSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQVRYLNP
VTKVADKCDFCAESRLAKGFPPICVSACPEHALIFGREDSPEIQAWLQQNKYYQYQLPGAGKPHLYRRFGQHLIKKENV
>Mature_238_residues
SWIGWTVAATALGDNQMSFTRRKFVLGMGTVIFFTGSASSLLANTRQEKEVRYAMIHDESRCNGCNICARACRKTNHVPA
QGSRLSIAHIPVTDNDNETQYHFFRQSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQVRYLNPV
TKVADKCDFCAESRLAKGFPPICVSACPEHALIFGREDSPEIQAWLQQNKYYQYQLPGAGKPHLYRRFGQHLIKKENV

Specific function: Unknown

COG id: COG0437

COG function: function code C; Fe-S-cluster-containing hydrogenase components 1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 3 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI226510944, Length=222, Percent_Identity=100, Blast_Score=468, Evalue=1e-133,
Organism=Escherichia coli, GI2367345, Length=213, Percent_Identity=50.2347417840376, Blast_Score=219, Evalue=1e-58,
Organism=Escherichia coli, GI1787122, Length=155, Percent_Identity=38.7096774193548, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI1787872, Length=152, Percent_Identity=38.8157894736842, Blast_Score=97, Evalue=7e-22,
Organism=Escherichia coli, GI1789370, Length=209, Percent_Identity=31.1004784688995, Blast_Score=94, Evalue=6e-21,
Organism=Escherichia coli, GI1790326, Length=181, Percent_Identity=29.8342541436464, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1787749, Length=188, Percent_Identity=30.3191489361702, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1789067, Length=158, Percent_Identity=35.4430379746835, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1787963, Length=151, Percent_Identity=28.476821192053, Blast_Score=71, Evalue=5e-14,
Organism=Escherichia coli, GI2367245, Length=144, Percent_Identity=36.8055555555556, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI1787740, Length=86, Percent_Identity=36.046511627907, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787478, Length=86, Percent_Identity=36.046511627907, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1788811, Length=148, Percent_Identity=33.7837837837838, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI87082180, Length=175, Percent_Identity=27.4285714285714, Blast_Score=61, Evalue=6e-11,
Organism=Escherichia coli, GI1789079, Length=98, Percent_Identity=37.7551020408163, Blast_Score=60, Evalue=1e-10,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26896; Mature: 26765

Theoretical pI: Translated: 8.13; Mature: 8.13

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

6.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
8.4 %Cys+Met (Translated Protein)
6.7 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
8.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSWIGWTVAATALGDNQMSFTRRKFVLGMGTVIFFTGSASSLLANTRQEKEVRYAMIHDE
CCCCCCEEEEEECCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHEEEEEEECC
SRCNGCNICARACRKTNHVPAQGSRLSIAHIPVTDNDNETQYHFFRQSCQHCEDAPCIDV
CCCCHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCEEE
CPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQVRYLNPVTKVADKCDFCAESRLAKGF
CCCCCCCCCCCCCEEECCCCCCCHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCC
PPICVSACPEHALIFGREDSPEIQAWLQQNKYYQYQLPGAGKPHLYRRFGQHLIKKENV
CCHHHHCCCCCEEEECCCCCHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SWIGWTVAATALGDNQMSFTRRKFVLGMGTVIFFTGSASSLLANTRQEKEVRYAMIHDE
CCCCCEEEEEECCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHEEEEEEECC
SRCNGCNICARACRKTNHVPAQGSRLSIAHIPVTDNDNETQYHFFRQSCQHCEDAPCIDV
CCCCHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCEEE
CPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQVRYLNPVTKVADKCDFCAESRLAKGF
CCCCCCCCCCCCCEEECCCCCCCHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCC
PPICVSACPEHALIFGREDSPEIQAWLQQNKYYQYQLPGAGKPHLYRRFGQHLIKKENV
CCHHHHCCCCCEEEECCCCCHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: Iron-Sulfur [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]