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The map label for this gene is ygeK [H]

Identifier: 157157590

GI number: 157157590

Start: 3191153

End: 3191599

Strand: Reverse

Name: ygeK [H]

Synonym: EcE24377A_3175

Alternate gene names: 157157590

Gene position: 3191599-3191153 (Counterclockwise)

Preceding gene: 157158255

Following gene: 157158277

Centisome position: 64.09

GC content: 35.12

Gene sequence:

>447_bases
ATGATGGGGTCCGAACTCGTAAAATGGGTTAAATCGCATAAGATAGATGCTCATATTATTACATTTGTAGCAAAGATGCC
GTATATTGATTCAATAAAATTGCTTGAAGCAGGTGCGAAAGGATGCGTATGGAAAACCAGTCACCCGGCGAAACTAAATC
GTGCTATTGATTCGATTAGTAATGGTTACACTTATTTTGATAGTGTACATATGGATTGTGAAAAAATATCTTCCAGGTAT
TCCTCTGATAATCAACTTACAAATCGTGAGTCAGAAATATTACAACTCATAGCTGATGGTAAAACAAACAAAGAAATCGC
TAATTTCTTGCAGTTAAGCAGAAAAACAGTCGAAACTCATAGACTCAATATCATGAAGAAATTAGATGTTCACAGTGGTA
TCGAGTTGATCAAAACAGCTTTACGTATGGGTGTTTGCACTATATAA

Upstream 100 bases:

>100_bases
ATATGAGGTTGTTGGGGGCTATAAAGATCTGAAGAAATCTATAGCGGAGTGTAACAAATCTACAGCCTAAATATTTATTT
TAGGAGAATTTGCAGGTGGA

Downstream 100 bases:

>100_bases
AAAAAAGAGGCTTTAGGCTCATTTTGCTGAAGCCTTACGATTGTCTAGTTCATTAAGCTTGGTATATACAATATATATTT
TGGGGCATATTGCTGTCTCT

Product: LuxR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 148; Mature: 148

Protein sequence:

>148_residues
MMGSELVKWVKSHKIDAHIITFVAKMPYIDSIKLLEAGAKGCVWKTSHPAKLNRAIDSISNGYTYFDSVHMDCEKISSRY
SSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSGIELIKTALRMGVCTI

Sequences:

>Translated_148_residues
MMGSELVKWVKSHKIDAHIITFVAKMPYIDSIKLLEAGAKGCVWKTSHPAKLNRAIDSISNGYTYFDSVHMDCEKISSRY
SSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSGIELIKTALRMGVCTI
>Mature_148_residues
MMGSELVKWVKSHKIDAHIITFVAKMPYIDSIKLLEAGAKGCVWKTSHPAKLNRAIDSISNGYTYFDSVHMDCEKISSRY
SSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSGIELIKTALRMGVCTI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1786747, Length=141, Percent_Identity=34.7517730496454, Blast_Score=74, Evalue=4e-15,
Organism=Escherichia coli, GI1788222, Length=152, Percent_Identity=30.2631578947368, Blast_Score=70, Evalue=4e-14,
Organism=Escherichia coli, GI1790102, Length=106, Percent_Identity=36.7924528301887, Blast_Score=63, Evalue=8e-12,
Organism=Escherichia coli, GI1788521, Length=136, Percent_Identity=30.1470588235294, Blast_Score=62, Evalue=1e-11,
Organism=Escherichia coli, GI1788546, Length=137, Percent_Identity=33.5766423357664, Blast_Score=60, Evalue=5e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR016032
- InterPro:   IPR001789
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 16725; Mature: 16725

Theoretical pI: Translated: 9.47; Mature: 9.47

Prosite motif: PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMGSELVKWVKSHKIDAHIITFVAKMPYIDSIKLLEAGAKGCVWKTSHPAKLNRAIDSIS
CCHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHCCCCCCEECCCCCHHHHHHHHHHH
NGYTYFDSVHMDCEKISSRYSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETH
CCCEEHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
RLNIMKKLDVHSGIELIKTALRMGVCTI
HHHHHHHHHHHCCHHHHHHHHHHHCCCC
>Mature Secondary Structure
MMGSELVKWVKSHKIDAHIITFVAKMPYIDSIKLLEAGAKGCVWKTSHPAKLNRAIDSIS
CCHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHCCCCCCEECCCCCHHHHHHHHHHH
NGYTYFDSVHMDCEKISSRYSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETH
CCCEEHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
RLNIMKKLDVHSGIELIKTALRMGVCTI
HHHHHHHHHHHCCHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]