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The map label for this gene is focC [H]

Identifier: 157157168

GI number: 157157168

Start: 1700466

End: 1700915

Strand: Reverse

Name: focC [H]

Synonym: EcE24377A_1695

Alternate gene names: 157157168

Gene position: 1700915-1700466 (Counterclockwise)

Preceding gene: 157159048

Following gene: 157157024

Centisome position: 34.16

GC content: 44.67

Gene sequence:

>450_bases
ATGCAAGGTAAAAAAGAGAATACGCTGCGGATAATCAACGCTACTAATCATCAGTTACCAGGCGACCGTGAAAGCCTGTT
CTGGGTGAATGTTAAAGCTATTCCTGCTATGGAAAAAGACCAGAAGAATGAGAATACATTACAGCTGGCAATTATTAGCC
GCATAAAAATGTTTTATCGCCCCACGAACCTGGCAATGGCACCTGAAGAAGCGCCTGCAATGCTTCGGTTTCGTCGCAGC
GGTAGCAAACTCACGCTTATTAATCCAACGCCCTATTTCATTACCGTAACAAATATGAAAGCAGGAAATAGCAATCTCCC
AAACACCATGGTGCCGCCAAAAGGTGAAGTATCGGTGGATATCACGCATGCTGCAACCGGGGATATCAGTTTTCAGACGA
TCAATGATTACGGTGCATTAACTCCGCGTATTAAGGCAACCATGCAGTAA

Upstream 100 bases:

>100_bases
TGTCTGTCGCATAGACACTGCATACGAAAACACCAGAGGGTGCTGTTACTTATTTAAGGACGGAGACACCCAGTTTGTCA
TTACCCCACCGCTTTTTTCC

Downstream 100 bases:

>100_bases
GCCAGTGACCTAATTAATAATAAACTCAATCGGAATTAATAATGACAGCCATTCGTGCCGCATTTAAGGCATATCGTATG
CATCAGGTGTTAATAATGCC

Product: periplasmic pilus chaperone family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 149; Mature: 149

Protein sequence:

>149_residues
MQGKKENTLRIINATNHQLPGDRESLFWVNVKAIPAMEKDQKNENTLQLAIISRIKMFYRPTNLAMAPEEAPAMLRFRRS
GSKLTLINPTPYFITVTNMKAGNSNLPNTMVPPKGEVSVDITHAATGDISFQTINDYGALTPRIKATMQ

Sequences:

>Translated_149_residues
MQGKKENTLRIINATNHQLPGDRESLFWVNVKAIPAMEKDQKNENTLQLAIISRIKMFYRPTNLAMAPEEAPAMLRFRRS
GSKLTLINPTPYFITVTNMKAGNSNLPNTMVPPKGEVSVDITHAATGDISFQTINDYGALTPRIKATMQ
>Mature_149_residues
MQGKKENTLRIINATNHQLPGDRESLFWVNVKAIPAMEKDQKNENTLQLAIISRIKMFYRPTNLAMAPEEAPAMLRFRRS
GSKLTLINPTPYFITVTNMKAGNSNLPNTMVPPKGEVSVDITHAATGDISFQTINDYGALTPRIKATMQ

Specific function: Involved in the biogenesis of the F1C fimbriae [H]

COG id: COG3121

COG function: function code NU; P pilus assembly protein, chaperone PapD

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Ig-like (immunoglobulin-like) domain [H]

Homologues:

Organism=Escherichia coli, GI1790771, Length=149, Percent_Identity=61.744966442953, Blast_Score=199, Evalue=7e-53,
Organism=Escherichia coli, GI1786743, Length=140, Percent_Identity=47.1428571428571, Blast_Score=135, Evalue=9e-34,
Organism=Escherichia coli, GI1787171, Length=142, Percent_Identity=42.2535211267606, Blast_Score=107, Evalue=5e-25,
Organism=Escherichia coli, GI1789532, Length=142, Percent_Identity=34.5070422535211, Blast_Score=90, Evalue=7e-20,
Organism=Escherichia coli, GI1786333, Length=153, Percent_Identity=33.3333333333333, Blast_Score=88, Evalue=3e-19,
Organism=Escherichia coli, GI1786936, Length=146, Percent_Identity=34.2465753424658, Blast_Score=84, Evalue=4e-18,
Organism=Escherichia coli, GI87081806, Length=139, Percent_Identity=32.3741007194245, Blast_Score=82, Evalue=1e-17,
Organism=Escherichia coli, GI1788677, Length=133, Percent_Identity=33.0827067669173, Blast_Score=76, Evalue=9e-16,
Organism=Escherichia coli, GI1788428, Length=124, Percent_Identity=31.4516129032258, Blast_Score=70, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008962
- InterPro:   IPR001829
- InterPro:   IPR016148
- InterPro:   IPR018046
- InterPro:   IPR016147 [H]

Pfam domain/function: PF02753 Pili_assembly_C; PF00345 Pili_assembly_N [H]

EC number: NA

Molecular weight: Translated: 16630; Mature: 16630

Theoretical pI: Translated: 10.42; Mature: 10.42

Prosite motif: PS00635 PILI_CHAPERONE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.4 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.4 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQGKKENTLRIINATNHQLPGDRESLFWVNVKAIPAMEKDQKNENTLQLAIISRIKMFYR
CCCCCCCEEEEEECCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEHHHHHHHHHCC
PTNLAMAPEEAPAMLRFRRSGSKLTLINPTPYFITVTNMKAGNSNLPNTMVPPKGEVSVD
CCCCEECCCCCCCEEEEECCCCEEEEECCCCEEEEEEEECCCCCCCCCCCCCCCCCEEEE
ITHAATGDISFQTINDYGALTPRIKATMQ
EEECCCCCEEEEEECCCCCCCCCEEEECC
>Mature Secondary Structure
MQGKKENTLRIINATNHQLPGDRESLFWVNVKAIPAMEKDQKNENTLQLAIISRIKMFYR
CCCCCCCEEEEEECCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEHHHHHHHHHCC
PTNLAMAPEEAPAMLRFRRSGSKLTLINPTPYFITVTNMKAGNSNLPNTMVPPKGEVSVD
CCCCEECCCCCCCEEEEECCCCEEEEECCCCEEEEEEEECCCCCCCCCCCCCCCCCEEEE
ITHAATGDISFQTINDYGALTPRIKATMQ
EEECCCCCEEEEEECCCCCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]