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The map label for this gene is ompL [H]

Identifier: 157157075

GI number: 157157075

Start: 4388666

End: 4389358

Strand: Reverse

Name: ompL [H]

Synonym: EcE24377A_4398

Alternate gene names: 157157075

Gene position: 4389358-4388666 (Counterclockwise)

Preceding gene: 157155047

Following gene: 157155081

Centisome position: 88.15

GC content: 39.54

Gene sequence:

>693_bases
ATGAAAAAGATTAATGCAATAATTTTATTATCTTCTCTGACCTCTGCCTCGGTATTTGCTGGCGCATACGTCGAAAACAG
GGAGGCATATAATCTTGCCTCCGATCAGGGCGAGGTTATGCTACGTGTGGGTTATAACTTCGATATGGGCGCGGGTATTA
TGTTAACCAATACCTACACCTTTCAGCGAGAAGATGAACTAAAACATGGCTATAATGAAATTGAAGGTTGGTATCCTTTA
TTCAAACCAACCGATAAATTAACCATCCAGCCCGGTGGCTTAATTAATGATAAGAGTATCGGTTCGGGTGGTGCAGTGTA
TCTGGACGTCAACTATAAATTTGTACCATGGTTTAATCTGACAGTACGAAATCGCTATAACCATAATAACTATAGTTCAA
CAGATTTGAGCGGGGAACTGGATAATAATGACACCTATGAAATTGGCACCTACTGGAATTTTAAAATCACCGATAAATTT
TCCTATACATTTGAGCCACATTATTTCATACGCGTAAATGACTTTAATAGCAGCAATGGAAAAGATCATCACTGGGAAAT
CACTAATACCTTCCGTTATCGCATTAATGAACACTGGCTGCCTTATTTCGAATTACGTTGGTTAGATCGTAATGTCGAAC
CGTACCACCGCGAGCAAAACCAGATTCGTATCGGGACGAAGTATTTCTTCTGA

Upstream 100 bases:

>100_bases
ACAGAAGAAAAAACGGCTTCCGTAACGTTATAAATGTCAATAGCCGCTATTTCCATCCTGGTGGGTGGCGGCCTCCCTAC
GTTTAAAAAATGGACTTATT

Downstream 100 bases:

>100_bases
TGTGAAACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGTTGATACGGTTTTCGTTGGCCGGAGTAAGCACATC
CGGCCATTAATCAAGCTTCA

Product: outer membrane porin L

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 230; Mature: 230

Protein sequence:

>230_residues
MKKINAIILLSSLTSASVFAGAYVENREAYNLASDQGEVMLRVGYNFDMGAGIMLTNTYTFQREDELKHGYNEIEGWYPL
FKPTDKLTIQPGGLINDKSIGSGGAVYLDVNYKFVPWFNLTVRNRYNHNNYSSTDLSGELDNNDTYEIGTYWNFKITDKF
SYTFEPHYFIRVNDFNSSNGKDHHWEITNTFRYRINEHWLPYFELRWLDRNVEPYHREQNQIRIGTKYFF

Sequences:

>Translated_230_residues
MKKINAIILLSSLTSASVFAGAYVENREAYNLASDQGEVMLRVGYNFDMGAGIMLTNTYTFQREDELKHGYNEIEGWYPL
FKPTDKLTIQPGGLINDKSIGSGGAVYLDVNYKFVPWFNLTVRNRYNHNNYSSTDLSGELDNNDTYEIGTYWNFKITDKF
SYTFEPHYFIRVNDFNSSNGKDHHWEITNTFRYRINEHWLPYFELRWLDRNVEPYHREQNQIRIGTKYFF
>Mature_230_residues
MKKINAIILLSSLTSASVFAGAYVENREAYNLASDQGEVMLRVGYNFDMGAGIMLTNTYTFQREDELKHGYNEIEGWYPL
FKPTDKLTIQPGGLINDKSIGSGGAVYLDVNYKFVPWFNLTVRNRYNHNNYSSTDLSGELDNNDTYEIGTYWNFKITDKF
SYTFEPHYFIRVNDFNSSNGKDHHWEITNTFRYRINEHWLPYFELRWLDRNVEPYHREQNQIRIGTKYFF

Specific function: Outer membrane channel protein that allows an efficient diffusion of low-molecular-weight solutes such as small sugars and tetraglycine. However, the specific substrate recognized by the ompL channel is unknown [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the oligogalacturonate-specific porin kdgM (TC 1.B.35) family. OmpL subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790307, Length=230, Percent_Identity=99.1304347826087, Blast_Score=473, Evalue=1e-135,
Organism=Escherichia coli, GI87082420, Length=235, Percent_Identity=24.6808510638298, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009331 [H]

Pfam domain/function: PF06178 KdgM [H]

EC number: NA

Molecular weight: Translated: 27170; Mature: 27170

Theoretical pI: Translated: 6.16; Mature: 6.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKINAIILLSSLTSASVFAGAYVENREAYNLASDQGEVMLRVGYNFDMGAGIMLTNTYT
CCCCEEEEEEECCCCCCEEEEEEECCCCEEEECCCCCCEEEEECCCCCCCCCEEEEEEEE
FQREDELKHGYNEIEGWYPLFKPTDKLTIQPGGLINDKSIGSGGAVYLDVNYKFVPWFNL
ECCCHHHHCCHHHCCCEECCCCCCCEEEECCCCEECCCCCCCCCEEEEEECEEEEEEEEE
TVRNRYNHNNYSSTDLSGELDNNDTYEIGTYWNFKITDKFSYTFEPHYFIRVNDFNSSNG
EEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEEEEEEEECCEEEEEEECCCCCCC
KDHHWEITNTFRYRINEHWLPYFELRWLDRNVEPYHREQNQIRIGTKYFF
CCEEEEEEEEEEEEECCCCCCEEEEEEECCCCCCCCCCCCEEEEEEEECC
>Mature Secondary Structure
MKKINAIILLSSLTSASVFAGAYVENREAYNLASDQGEVMLRVGYNFDMGAGIMLTNTYT
CCCCEEEEEEECCCCCCEEEEEEECCCCEEEECCCCCCEEEEECCCCCCCCCEEEEEEEE
FQREDELKHGYNEIEGWYPLFKPTDKLTIQPGGLINDKSIGSGGAVYLDVNYKFVPWFNL
ECCCHHHHCCHHHCCCEECCCCCCCEEEECCCCEECCCCCCCCCEEEEEECEEEEEEEEE
TVRNRYNHNNYSSTDLSGELDNNDTYEIGTYWNFKITDKFSYTFEPHYFIRVNDFNSSNG
EEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEEEEEEEECCEEEEEEECCCCCCC
KDHHWEITNTFRYRINEHWLPYFELRWLDRNVEPYHREQNQIRIGTKYFF
CCEEEEEEEEEEEEECCCCCCEEEEEEECCCCCCCCCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]