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The map label for this gene is ydhY [H]

Identifier: 157156899

GI number: 157156899

Start: 1879669

End: 1880295

Strand: Reverse

Name: ydhY [H]

Synonym: EcE24377A_1889

Alternate gene names: 157156899

Gene position: 1880295-1879669 (Counterclockwise)

Preceding gene: 157156095

Following gene: 157155246

Centisome position: 37.76

GC content: 49.28

Gene sequence:

>627_bases
ATGAACCCGGTTGATCGTCCACTATTAGATATTGGCTTAACGCGATTAGAATTCTTGCGTATATCAGGAAAAGGCCTTGC
TGGTCTAACAATTGCCCCTGCGTTACTGTCACTTTTGGGTTGCAAACAGGAAGATATTGATAGCGGCACAGTAGGGTTGA
TAAATACACCCAAAGGGGTGCTGGTGACCCAGCGAGCGCGATGCACGGGTTGCCACCGCTGTGAAATCTCTTGTACCAAC
TTCAACGATGGCTCAGTAGGGACATTCTTCTCCCGTATCAAAATCAATCGCAATTATTTCTTTGGCGACAACGGGGTTGG
CTCTGGCGGCGGCCTGTATGGCGATCTCAACTATACCGCGGACACCTGCCGTCAATGCAAAGAGCCGCAATGCGTGAACG
TCTGCCCGATTGGTGCGATTACCTGGCAGCAGAAAGAAGGCTGTATTACCGTCGATCATAAACGCTGTATTGGCTGTAGC
GCCTGTACTACGGCATGCCCGTGGATGATGGCCACCGTAAATACCGAAAGTAAAAAATCCTCGAAATGTGTGTTATGCGG
TGAATGCGCAAACGCCTGCCCAACAGGGGCGTTAAAAATTATCGAGTGGAAAGATATTACTGTGTGA

Upstream 100 bases:

>100_bases
TATCTGGTGTTGGGGACAGAGTCAGCAGCGTATTAGTTGAATGCTTAATATCAGGCTGCTGAATTGTCAGCACTGTGTTT
GCGAAGAGGATGCGAAATAA

Downstream 100 bases:

>100_bases
ATCTTGCAAAGGAAAAAATCATGGCTAACGGTTGGACAGGTAATATATTAAGAGTCAATCTCACGACAGGAAATATTACC
CTCGAAGATTCCAGTAAGTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 208; Mature: 208

Protein sequence:

>208_residues
MNPVDRPLLDIGLTRLEFLRISGKGLAGLTIAPALLSLLGCKQEDIDSGTVGLINTPKGVLVTQRARCTGCHRCEISCTN
FNDGSVGTFFSRIKINRNYFFGDNGVGSGGGLYGDLNYTADTCRQCKEPQCVNVCPIGAITWQQKEGCITVDHKRCIGCS
ACTTACPWMMATVNTESKKSSKCVLCGECANACPTGALKIIEWKDITV

Sequences:

>Translated_208_residues
MNPVDRPLLDIGLTRLEFLRISGKGLAGLTIAPALLSLLGCKQEDIDSGTVGLINTPKGVLVTQRARCTGCHRCEISCTN
FNDGSVGTFFSRIKINRNYFFGDNGVGSGGGLYGDLNYTADTCRQCKEPQCVNVCPIGAITWQQKEGCITVDHKRCIGCS
ACTTACPWMMATVNTESKKSSKCVLCGECANACPTGALKIIEWKDITV
>Mature_208_residues
MNPVDRPLLDIGLTRLEFLRISGKGLAGLTIAPALLSLLGCKQEDIDSGTVGLINTPKGVLVTQRARCTGCHRCEISCTN
FNDGSVGTFFSRIKINRNYFFGDNGVGSGGGLYGDLNYTADTCRQCKEPQCVNVCPIGAITWQQKEGCITVDHKRCIGCS
ACTTACPWMMATVNTESKKSSKCVLCGECANACPTGALKIIEWKDITV

Specific function: Unknown

COG id: COG0437

COG function: function code C; Fe-S-cluster-containing hydrogenase components 1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 4 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787963, Length=208, Percent_Identity=99.0384615384615, Blast_Score=422, Evalue=1e-120,
Organism=Escherichia coli, GI1787872, Length=150, Percent_Identity=32, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1787122, Length=150, Percent_Identity=30.6666666666667, Blast_Score=73, Evalue=1e-14,
Organism=Escherichia coli, GI226510944, Length=151, Percent_Identity=29.8013245033113, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI87082179, Length=159, Percent_Identity=28.3018867924528, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI2367245, Length=161, Percent_Identity=30.4347826086957, Blast_Score=71, Evalue=6e-14,
Organism=Escherichia coli, GI87082180, Length=156, Percent_Identity=30.7692307692308, Blast_Score=67, Evalue=7e-13,
Organism=Escherichia coli, GI2367345, Length=164, Percent_Identity=28.6585365853659, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1788811, Length=159, Percent_Identity=27.0440251572327, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1787478, Length=167, Percent_Identity=26.3473053892216, Blast_Score=64, Evalue=6e-12,
Organism=Escherichia coli, GI1789067, Length=174, Percent_Identity=28.735632183908, Blast_Score=63, Evalue=1e-11,
Organism=Escherichia coli, GI1790326, Length=182, Percent_Identity=24.1758241758242, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1787749, Length=155, Percent_Identity=24.5161290322581, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001450
- InterPro:   IPR017896
- InterPro:   IPR017900 [H]

Pfam domain/function: PF00037 Fer4 [H]

EC number: NA

Molecular weight: Translated: 22312; Mature: 22312

Theoretical pI: Translated: 7.94; Mature: 7.94

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

8.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
10.1 %Cys+Met (Translated Protein)
8.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
10.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPVDRPLLDIGLTRLEFLRISGKGLAGLTIAPALLSLLGCKQEDIDSGTVGLINTPKGV
CCCCCCHHHHHHHCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCE
LVTQRARCTGCHRCEISCTNFNDGSVGTFFSRIKINRNYFFGDNGVGSGGGLYGDLNYTA
EEECCCCCCCCEEEEEEECCCCCCCHHEEEEEEEEECCEEECCCCCCCCCCEEEECCCCH
DTCRQCKEPQCVNVCPIGAITWQQKEGCITVDHKRCIGCSACTTACPWMMATVNTESKKS
HHHHHCCCCCCEEEECCCEEEEECCCCCEEECCCCCCCCHHHHHHCCEEEEEECCCCCCC
SKCVLCGECANACPTGALKIIEWKDITV
CCEEEECCCCCCCCCCCEEEEEEEECCC
>Mature Secondary Structure
MNPVDRPLLDIGLTRLEFLRISGKGLAGLTIAPALLSLLGCKQEDIDSGTVGLINTPKGV
CCCCCCHHHHHHHCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCE
LVTQRARCTGCHRCEISCTNFNDGSVGTFFSRIKINRNYFFGDNGVGSGGGLYGDLNYTA
EEECCCCCCCCEEEEEEECCCCCCCHHEEEEEEEEECCEEECCCCCCCCCCEEEECCCCH
DTCRQCKEPQCVNVCPIGAITWQQKEGCITVDHKRCIGCSACTTACPWMMATVNTESKKS
HHHHHCCCCCCEEEECCCEEEEECCCCCEEECCCCCCCCHHHHHHCCEEEEEECCCCCCC
SKCVLCGECANACPTGALKIIEWKDITV
CCEEEECCCCCCCCCCCEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: Iron-Sulfur; Iron-Sulfur; Iron-Sulfur; Iron-Sulfur; Iron-Sulfur; Iron-Sulfur; Iron-Sulfur; Iron-Sulfur [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]