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The map label for this gene is rhmA [H]

Identifier: 157156572

GI number: 157156572

Start: 2536763

End: 2537275

Strand: Reverse

Name: rhmA [H]

Synonym: EcE24377A_2543

Alternate gene names: 157156572

Gene position: 2537275-2536763 (Counterclockwise)

Preceding gene: 157158520

Following gene: 157156117

Centisome position: 50.95

GC content: 54.97

Gene sequence:

>513_bases
GTGCCGGTTTACTGCACCGGCACATTCCCCCTCCGGCAAAACTTGTCCAACCCTCCCTACGGTGAGCGTGGTGTTGGGGC
CAGTGTGGCACGGGCTGCGCGCTGGGGACGCATTGAGAATTACATGGCGCAAGTTAACGATTCACTTTGTCTGTTGGTGC
AGGTGGAAAGTAAAACGGCACTGGATAACCTGGACGAAATCCTCGACGTCGAAGGGATTGATGGCGTGTTTATTGGACCT
GCGGATCTTTCTGCGTCGTTGGGCTACCCGGATAACGCAGGGCACCCGGAAGTGCAGCGAATTATTGAAACCAGTATTCG
GCGGATCCGTGCTGCGGGTAAAGCGGCTGGTTTTCTGGCTGTGGCTCCTGATATGGCGCAGCAATGCCTGGCGTGGGGAG
CGAACTTTGTCGCTGTTGGCGTTGACACGATGCTCTACAGCGATGCCCTGGATCAACGACTGGCGATGTTTAAATCAGGC
AAAAATGGGCCACGCATAAAAGGTAGTTATTGA

Upstream 100 bases:

>100_bases
TATGCTGCGCCGTTGGTTAAACGGCCAGGATATCGCCAGTGAGCATGGCTGGATTGAGGTTGTTGAGTCCATGACCTTAT
CTGTCTGATTCCGCCACTCT

Downstream 100 bases:

>100_bases
TATCAAAGGCCCATGGGGATCGGCTGTGGGCCTGTGTTAATTAGTGGTTATTCGCTGCCAGATCGGCTTCGCTTAGCTGG
GTGGCCGCGAGCACCTGGTC

Product: HpcH/HpaI aldolase/citrate lyase family protein

Products: NA

Alternate protein names: KDR aldolase; 2-dehydro-3-deoxyrhamnonate aldolase [H]

Number of amino acids: Translated: 170; Mature: 169

Protein sequence:

>170_residues
MPVYCTGTFPLRQNLSNPPYGERGVGASVARAARWGRIENYMAQVNDSLCLLVQVESKTALDNLDEILDVEGIDGVFIGP
ADLSASLGYPDNAGHPEVQRIIETSIRRIRAAGKAAGFLAVAPDMAQQCLAWGANFVAVGVDTMLYSDALDQRLAMFKSG
KNGPRIKGSY

Sequences:

>Translated_170_residues
MPVYCTGTFPLRQNLSNPPYGERGVGASVARAARWGRIENYMAQVNDSLCLLVQVESKTALDNLDEILDVEGIDGVFIGP
ADLSASLGYPDNAGHPEVQRIIETSIRRIRAAGKAAGFLAVAPDMAQQCLAWGANFVAVGVDTMLYSDALDQRLAMFKSG
KNGPRIKGSY
>Mature_169_residues
PVYCTGTFPLRQNLSNPPYGERGVGASVARAARWGRIENYMAQVNDSLCLLVQVESKTALDNLDEILDVEGIDGVFIGPA
DLSASLGYPDNAGHPEVQRIIETSIRRIRAAGKAAGFLAVAPDMAQQCLAWGANFVAVGVDTMLYSDALDQRLAMFKSGK
NGPRIKGSY

Specific function: Catalyzes the reversible retro-aldol cleavage of 2-keto- 3-deoxy-L-rhamnonate (KDR) to pyruvate and lactaldehyde [H]

COG id: COG3836

COG function: function code G; 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the HpcH/HpaI aldolase family. KDR aldolase subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788578, Length=153, Percent_Identity=100, Blast_Score=315, Evalue=1e-87,
Organism=Escherichia coli, GI1789514, Length=141, Percent_Identity=44.6808510638298, Blast_Score=123, Evalue=7e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005000
- InterPro:   IPR015813 [H]

Pfam domain/function: PF03328 HpcH_HpaI [H]

EC number: NA

Molecular weight: Translated: 18264; Mature: 18133

Theoretical pI: Translated: 5.21; Mature: 5.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPVYCTGTFPLRQNLSNPPYGERGVGASVARAARWGRIENYMAQVNDSLCLLVQVESKTA
CCEEECCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHH
LDNLDEILDVEGIDGVFIGPADLSASLGYPDNAGHPEVQRIIETSIRRIRAAGKAAGFLA
HHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEE
VAPDMAQQCLAWGANFVAVGVDTMLYSDALDQRLAMFKSGKNGPRIKGSY
ECHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
PVYCTGTFPLRQNLSNPPYGERGVGASVARAARWGRIENYMAQVNDSLCLLVQVESKTA
CEEECCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHH
LDNLDEILDVEGIDGVFIGPADLSASLGYPDNAGHPEVQRIIETSIRRIRAAGKAAGFLA
HHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEE
VAPDMAQQCLAWGANFVAVGVDTMLYSDALDQRLAMFKSGKNGPRIKGSY
ECHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA