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The map label for this gene is cas5e [H]

Identifier: 157156165

GI number: 157156165

Start: 3059170

End: 3059916

Strand: Reverse

Name: cas5e [H]

Synonym: EcE24377A_3059

Alternate gene names: 157156165

Gene position: 3059916-3059170 (Counterclockwise)

Preceding gene: 157157725

Following gene: 157155574

Centisome position: 61.45

GC content: 55.42

Gene sequence:

>747_bases
ATGAGCCAATATCTGATTTTTCAGCTTCATGGGCCGATGGCATCCTGGGGCGTCGATGCCCCCGGCGAAGTGCGTCATAC
CCATGAACTGCCTTCGCGCTCAGCATTGCTGGGGCTGCTGGCTGCCGGGGTAGGGATCCGGCGTGATGATACCGAACGCT
TAAACGCGTTTAATCGCCACTATTCACTGGTGGTTTGCGCCAGCCGTAACCCGCGCTGGGCACGGGATTATCACACGGTC
CAGATGCCAAAAGAGGTGCGTAAAGCACGTTATTTCAGCCGTCGCGAAGAGTTGAGCGCCCCTGAGCTTTTGAGCGCGAT
TATCTCCCGGCGCGACTACTACACCGATGCCTGGTGGATGGTGGCGGTGGCAACAACCCCCGATGCGCCTTACAGCCTCG
AACAGTTGCAGGACGGTTTACGCCATCCGGTTTTTCCGCTTTATCTGGGGCGAAAAAGTCATCCGCTGGCGTTACCACTT
GCGCCGTTACTACTCGAAGGCAACGCGTCGGATACCTTACGTAACGCATACCAACAGTATCAGGATCATTTCCGCAAACT
GAAAGTCTCACTCCCAAAACTTCAGGATGAATGCTGGTGGGAAGGGGAACACGACGGCCTGGTCGCGAGCAAAATATTAC
GCCGTCGGGATGTTCCTTTAAATCGTCAGCAGTGGTTGTTTGGGGAACGCACCGTCAATCAGGGGCCGTGGCTCAGCAAG
GAGGAACCATGTACCTCTCAAGAATAA

Upstream 100 bases:

>100_bases
GTCTACGAACAGAAGACCGATTACGCAAGTTTTGACGTGATGAACAAACAGGGAAGCATGAAGGACGTGCTGGACTTTAT
CTGCGCGTAAGGGGCGGCTT

Downstream 100 bases:

>100_bases
CCTTACATACCGGCCAGCTTTCCCCAGCGCAGTTGCTGCATCTGGTGGATCGCGGTGAATATGTGATGCATCAGTGGCTG
TGGGATCTCTTCCCTGGCGG

Product: CRISPR-associated Cas5 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 248; Mature: 247

Protein sequence:

>248_residues
MSQYLIFQLHGPMASWGVDAPGEVRHTHELPSRSALLGLLAAGVGIRRDDTERLNAFNRHYSLVVCASRNPRWARDYHTV
QMPKEVRKARYFSRREELSAPELLSAIISRRDYYTDAWWMVAVATTPDAPYSLEQLQDGLRHPVFPLYLGRKSHPLALPL
APLLLEGNASDTLRNAYQQYQDHFRKLKVSLPKLQDECWWEGEHDGLVASKILRRRDVPLNRQQWLFGERTVNQGPWLSK
EEPCTSQE

Sequences:

>Translated_248_residues
MSQYLIFQLHGPMASWGVDAPGEVRHTHELPSRSALLGLLAAGVGIRRDDTERLNAFNRHYSLVVCASRNPRWARDYHTV
QMPKEVRKARYFSRREELSAPELLSAIISRRDYYTDAWWMVAVATTPDAPYSLEQLQDGLRHPVFPLYLGRKSHPLALPL
APLLLEGNASDTLRNAYQQYQDHFRKLKVSLPKLQDECWWEGEHDGLVASKILRRRDVPLNRQQWLFGERTVNQGPWLSK
EEPCTSQE
>Mature_247_residues
SQYLIFQLHGPMASWGVDAPGEVRHTHELPSRSALLGLLAAGVGIRRDDTERLNAFNRHYSLVVCASRNPRWARDYHTVQ
MPKEVRKARYFSRREELSAPELLSAIISRRDYYTDAWWMVAVATTPDAPYSLEQLQDGLRHPVFPLYLGRKSHPLALPLA
PLLLEGNASDTLRNAYQQYQDHFRKLKVSLPKLQDECWWEGEHDGLVASKILRRRDVPLNRQQWLFGERTVNQGPWLSKE
EPCTSQE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87082154, Length=179, Percent_Identity=35.195530726257, Blast_Score=70, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR021124
- InterPro:   IPR013422
- InterPro:   IPR010147 [H]

Pfam domain/function: PF09704 Cas_Cas5d [H]

EC number: NA

Molecular weight: Translated: 28671; Mature: 28540

Theoretical pI: Translated: 8.76; Mature: 8.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQYLIFQLHGPMASWGVDAPGEVRHTHELPSRSALLGLLAAGVGIRRDDTERLNAFNRH
CCCEEEEEECCCHHHCCCCCCCCCHHHHCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHCC
YSLVVCASRNPRWARDYHTVQMPKEVRKARYFSRREELSAPELLSAIISRRDYYTDAWWM
EEEEEECCCCCCCHHCCHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCEEE
VAVATTPDAPYSLEQLQDGLRHPVFPLYLGRKSHPLALPLAPLLLEGNASDTLRNAYQQY
EEEEECCCCCCCHHHHHHHHCCCCCEEEECCCCCCCCCCCHHEEECCCCHHHHHHHHHHH
QDHFRKLKVSLPKLQDECWWEGEHDGLVASKILRRRDVPLNRQQWLFGERTVNQGPWLSK
HHHHHHHHHHCCHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCC
EEPCTSQE
CCCCCCCC
>Mature Secondary Structure 
SQYLIFQLHGPMASWGVDAPGEVRHTHELPSRSALLGLLAAGVGIRRDDTERLNAFNRH
CCEEEEEECCCHHHCCCCCCCCCHHHHCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHCC
YSLVVCASRNPRWARDYHTVQMPKEVRKARYFSRREELSAPELLSAIISRRDYYTDAWWM
EEEEEECCCCCCCHHCCHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCEEE
VAVATTPDAPYSLEQLQDGLRHPVFPLYLGRKSHPLALPLAPLLLEGNASDTLRNAYQQY
EEEEECCCCCCCHHHHHHHHCCCCCEEEECCCCCCCCCCCHHEEECCCCHHHHHHHHHHH
QDHFRKLKVSLPKLQDECWWEGEHDGLVASKILRRRDVPLNRQQWLFGERTVNQGPWLSK
HHHHHHHHHHCCHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCC
EEPCTSQE
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]