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The map label for this gene is rodZ

Identifier: 157155877

GI number: 157155877

Start: 2792229

End: 2793242

Strand: Reverse

Name: rodZ

Synonym: EcE24377A_2800

Alternate gene names: 157155877

Gene position: 2793242-2792229 (Counterclockwise)

Preceding gene: 157157838

Following gene: 157158896

Centisome position: 56.09

GC content: 54.64

Gene sequence:

>1014_bases
ATGAATACTGAAGCCACGCACGACCAAAATGAAGCACTTACTACCGGCGCTCGCCTGCGTAATGCTCGCGAACAACTAGG
ACTTAGTCAGCAGGCCGTTGCCGAGCGACTTTGCCTGAAGGTTTCCACGGTACGCGACATTGAAGAAGATAAGGCACCCG
CCGATCTTGCTTCAACATTCCTGCGCGGATATATCCGCTCTTATGCGCGTCTGGTACATATTCCAGAAGAAGAACTGCTG
CCAGGGCTGGAAAAGCAGGCTCCACTACGGGCTGCGAAAGTTGCGCCGATGCAGAGTTTTTCCCTCGGTAAACGCCGCAA
AAAACGTGACGGCTGGCTGATGACCTTCACCTGGCTGGTGTTGTTTGTGGTTATCGGCCTGAGCGGTGCCTGGTGGTGGC
AAGACCACAAAGCTCAGCAGGAAGAGATCACCACTATGGCCGATCAATCTTCGGCGGAACTGAGCAGTAATAGCGAGCAG
GGGCAGAGTGTTCCGTTAAATACGTCGACAACTACAGACCCGGCTACAACGTCCACGCCGCCAGCGTCTGTGGATACTAC
CGCAACCAACACGCAAACACCTGCCGTAACTGCGCCAGCACCAGCTGTTGATCCGCAACAGAATGCGGTTGTTTCGCCTT
CGCAGGCAAATGTTGATACCGCCGCGACCCCGGCACCAACGGCAGCAACAACGCCAGATGGTGCTGCGCCGTTGCCAACC
GATCAGGCTGGCGTGACCACGCCGGTGGCTGATCCGAATGCGCTGGTGATGAACTTTACTGCCGATTGCTGGCTGGAGGT
CACTGATGCTACCGGTAAAAGATTGTTTAGCGGTATGCAGCGTAAAGACGGTAATTTGAACTTAACCGGCCAGGCACCAT
ACAAACTGAAAATTGGTGCGCCAGCCGCAGTACAGATCCAGTATCAAGGGAAACCTGTCGATCTGAGTCGTTTTATCAGA
ACTAACCAGGTTGCGCGTCTGACCCTCAATGCCGAACAATCACCGGCGCAGTAA

Upstream 100 bases:

>100_bases
ATACTGTATGATAACGGTTAACTTAACGGATGTTTCGCGGTGTGGGTGAGCATGATGGTTCACCGGCATCTCAATTCTCA
TTTAAACGTACCTGCAGCGA

Downstream 100 bases:

>100_bases
CAGACGGGTAACGCGGGAGATTTTTCATGCATAACCAGGCTCCAATTCAACGTAGAAAATCAACACGTATTTACGTTGGG
AATGTGCCGATTGGCGATGG

Product: cytoskeletal protein RodZ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 337; Mature: 337

Protein sequence:

>337_residues
MNTEATHDQNEALTTGARLRNAREQLGLSQQAVAERLCLKVSTVRDIEEDKAPADLASTFLRGYIRSYARLVHIPEEELL
PGLEKQAPLRAAKVAPMQSFSLGKRRKKRDGWLMTFTWLVLFVVIGLSGAWWWQDHKAQQEEITTMADQSSAELSSNSEQ
GQSVPLNTSTTTDPATTSTPPASVDTTATNTQTPAVTAPAPAVDPQQNAVVSPSQANVDTAATPAPTAATTPDGAAPLPT
DQAGVTTPVADPNALVMNFTADCWLEVTDATGKRLFSGMQRKDGNLNLTGQAPYKLKIGAPAAVQIQYQGKPVDLSRFIR
TNQVARLTLNAEQSPAQ

Sequences:

>Translated_337_residues
MNTEATHDQNEALTTGARLRNAREQLGLSQQAVAERLCLKVSTVRDIEEDKAPADLASTFLRGYIRSYARLVHIPEEELL
PGLEKQAPLRAAKVAPMQSFSLGKRRKKRDGWLMTFTWLVLFVVIGLSGAWWWQDHKAQQEEITTMADQSSAELSSNSEQ
GQSVPLNTSTTTDPATTSTPPASVDTTATNTQTPAVTAPAPAVDPQQNAVVSPSQANVDTAATPAPTAATTPDGAAPLPT
DQAGVTTPVADPNALVMNFTADCWLEVTDATGKRLFSGMQRKDGNLNLTGQAPYKLKIGAPAAVQIQYQGKPVDLSRFIR
TNQVARLTLNAEQSPAQ
>Mature_337_residues
MNTEATHDQNEALTTGARLRNAREQLGLSQQAVAERLCLKVSTVRDIEEDKAPADLASTFLRGYIRSYARLVHIPEEELL
PGLEKQAPLRAAKVAPMQSFSLGKRRKKRDGWLMTFTWLVLFVVIGLSGAWWWQDHKAQQEEITTMADQSSAELSSNSEQ
GQSVPLNTSTTTDPATTSTPPASVDTTATNTQTPAVTAPAPAVDPQQNAVVSPSQANVDTAATPAPTAATTPDGAAPLPT
DQAGVTTPVADPNALVMNFTADCWLEVTDATGKRLFSGMQRKDGNLNLTGQAPYKLKIGAPAAVQIQYQGKPVDLSRFIR
TNQVARLTLNAEQSPAQ

Specific function: Cytoskeletal protein that is involved in cell-shape control through regulation of the length of the long axis

COG id: COG1426

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein. Note=Forms helical filaments along the long axis of the cell (By similarity)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain

Homologues:

Organism=Escherichia coli, GI1788864, Length=337, Percent_Identity=99.406528189911, Blast_Score=680, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RODZ_ECO24 (A7ZPV9)

Other databases:

- EMBL:   CP000800
- RefSeq:   YP_001463838.1
- ProteinModelPortal:   A7ZPV9
- SMR:   A7ZPV9
- STRING:   A7ZPV9
- EnsemblBacteria:   EBESCT00000022028
- GeneID:   5589550
- GenomeReviews:   CP000800_GR
- KEGG:   ecw:EcE24377A_2800
- NMPDR:   fig|331111.3.peg.528
- eggNOG:   COG1426
- GeneTree:   EBGT00050000010093
- HOGENOM:   HBG678691
- OMA:   KLPGHTF
- ProtClustDB:   PRK10856
- BioCyc:   ECOL331111:ECE24377A_2800-MONOMER
- HAMAP:   MF_02017
- InterPro:   IPR001387
- InterPro:   IPR010982
- SMART:   SM00530

Pfam domain/function: PF01381 HTH_3; SSF47413 Lambda_like_DNA

EC number: NA

Molecular weight: Translated: 36201; Mature: 36201

Theoretical pI: Translated: 5.43; Mature: 5.43

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x1f3bcf84)-;

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTEATHDQNEALTTGARLRNAREQLGLSQQAVAERLCLKVSTVRDIEEDKAPADLASTF
CCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
LRGYIRSYARLVHIPEEELLPGLEKQAPLRAAKVAPMQSFSLGKRRKKRDGWLMTFTWLV
HHHHHHHHHHEECCCHHHHCCCCCCCCCCHHHHHCCCHHHHHHHHHHHCCCEEHHHHHHH
LFVVIGLSGAWWWQDHKAQQEEITTMADQSSAELSSNSEQGQSVPLNTSTTTDPATTSTP
HHHHHHCCCCEEECCCCCHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
PASVDTTATNTQTPAVTAPAPAVDPQQNAVVSPSQANVDTAATPAPTAATTPDGAAPLPT
CCCCCCCCCCCCCCCEECCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
DQAGVTTPVADPNALVMNFTADCWLEVTDATGKRLFSGMQRKDGNLNLTGQAPYKLKIGA
CCCCCCCCCCCCCEEEEEECCEEEEEEECHHHHHHHHHHHCCCCCEEEECCCCEEEEECC
PAAVQIQYQGKPVDLSRFIRTNQVARLTLNAEQSPAQ
CEEEEEEECCCCCCHHHHHHCCCEEEEEECCCCCCCH
>Mature Secondary Structure
MNTEATHDQNEALTTGARLRNAREQLGLSQQAVAERLCLKVSTVRDIEEDKAPADLASTF
CCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
LRGYIRSYARLVHIPEEELLPGLEKQAPLRAAKVAPMQSFSLGKRRKKRDGWLMTFTWLV
HHHHHHHHHHEECCCHHHHCCCCCCCCCCHHHHHCCCHHHHHHHHHHHCCCEEHHHHHHH
LFVVIGLSGAWWWQDHKAQQEEITTMADQSSAELSSNSEQGQSVPLNTSTTTDPATTSTP
HHHHHHCCCCEEECCCCCHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
PASVDTTATNTQTPAVTAPAPAVDPQQNAVVSPSQANVDTAATPAPTAATTPDGAAPLPT
CCCCCCCCCCCCCCCEECCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
DQAGVTTPVADPNALVMNFTADCWLEVTDATGKRLFSGMQRKDGNLNLTGQAPYKLKIGA
CCCCCCCCCCCCCEEEEEECCEEEEEEECHHHHHHHHHHHCCCCCEEEECCCCEEEEECC
PAAVQIQYQGKPVDLSRFIRTNQVARLTLNAEQSPAQ
CEEEEEEECCCCCCHHHHHHCCCEEEEEECCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA