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The map label for this gene is intF [C]

Identifier: 157155065

GI number: 157155065

Start: 3031348

End: 3032808

Strand: Reverse

Name: intF [C]

Synonym: EcE24377A_3028

Alternate gene names: 157155065

Gene position: 3032808-3031348 (Counterclockwise)

Preceding gene: 157158995

Following gene: 157156181

Centisome position: 60.9

GC content: 42.37

Gene sequence:

>1461_bases
TTGAAAACAACTCTCAGTCAGGCTTTTATTATCAACAAGTTAAGCATTGGTGTGAAGCCCACCCTTAACCATGCGGGAAA
AGTCGTTTTCGAAGCAAACCCAGAGCATAAACCTTACATAGTTTTTGATGACCACCGCGACTCACCAGTTGGCTTTGGTG
TGAAGGTCAGTTTGACGAAAAAAACGTATGTAATCCAGAGAAGAGTGTCCTCCGGTGATCGTAGTGTGAGTGAAGGTAAG
AAACCTAGTTCTGTGCTCAAAGTAAAAGTTGGCAATGTTTCTGATTTTCCGAATATCGATCAAGCTCGTGAAGTAGCCCG
ACAGTTGGTTCAGACCATGATCGCAACAAAGAGGAATCCCAATAGAATCAAGCGAGAAACAGAGGCTTCTGAACTCACTA
TCAGCGAAGTCTTTGCTCAATACAGAAATCATTTGATGGGTAGATCTAAACCAGCGAAACCCAACACTTTGGCTGTATTG
GATAAAGCAGAAAACAGACTTTCCGAGTGGGCTGGTTTGCGAGTTAAAGACCTTACTGGTAATGAAATTCTTCGGAAGTT
TGATGAGATTGCTTCAAGAGCCAGAACAGCAGCGGAACAGACCTTTAGGTGGATTAATGTTGCTGTCAGACATGCAATCG
AAATTGAAGCTGGTAATGCTCAAACACAGCAACGACAACCATCACTGTCATACAATCCATTCTCTATCCTGAAAGTGCAG
AAAAAATTCAGGACTCGATCAGAACTGGAAGACAGCTACAAAGCGAAAGGTGTTCGAAACCCACTTTCCCCAAAAGACAC
ATTAGGTAGGTTTCTGACTGCATTACATAACAAAAGAAGTTTCAATCGCTTGGGTTGTGATTATCTGCTACTGACGGTTC
TGTTAGGTGCGAGGAAAGAAGAAACTGCTTCGCTATGCTGGCGTGAGGTTCTGACTGAAGAAGAAGCAAGAACGACCAGT
TATGTTGATCTTGAAAACCGAATGATTCGATTCTTCGACACCAAAAACCGTAATGACCATGAACTGCCAATCTGCGATGC
GACAAAGCGTATTCTGGAAGACCGAAGAGATATCGTCAACGATAACGAAAAGCGAGCAGATAAACGCAAATGGGTTTTTC
CAGCTCGTTCATCACGAAGCAAGATTGGACACTATTCAGATAGTAAAAGTTTACGCGAAAACCTGTGCCAAGAGGCAGGG
ATAGTGAAGTTAGGTATGCATGATCTTCGAAGAACTTTTGGTCGTGTAGCTGAAGAACTCACCTCTTATGCAGTTGTTAA
AAAATTGCTTAACCACCGAAACACGACTGACCCTACAGAGCGATACGCAAACCCAGATCAAGATCGTGTTTATGAAGCAC
TACAACGTATAGAGTTAAATATGTTGTTGACTTCACCTGAGTTATATAATTCATTATTAGCGTCATCCAAGTATCCACCA
ATTCTCAAGGGGAAAGTATGA

Upstream 100 bases:

>100_bases
TTTAAACCCACATAAACCCATAAATTTGTAGCTCACTTGTAGCCTAGAATGTGATAGGTTACCTTCTAATCATTCTTGGG
CTACAAATAGTGGTGATACT

Downstream 100 bases:

>100_bases
AGGGGCAGAGTTTTGATAAATATTCATTATCAAGAGCAATAAAAAAAGTGATTTCTATAAATATGATCAGCTCAGTGATG
ATGCGTACTTAGAAAAAGAA

Product: putative phage integrase family protein

Products: NA

Alternate protein names: Phage Integrase Family Protein; Phage Integrase; Phage-Related Integrase; Phage Related Integrase; Cytoplasmic Protein; Site-Specific Recombinase Phage Integrase Family; Integrase Fragment; Integrase Bacteriophage; Integrase/Recombinase; Site-Specific Recombinase Phage Integrase Family Protein; Integrase Family Protein

Number of amino acids: Translated: 486; Mature: 486

Protein sequence:

>486_residues
MKTTLSQAFIINKLSIGVKPTLNHAGKVVFEANPEHKPYIVFDDHRDSPVGFGVKVSLTKKTYVIQRRVSSGDRSVSEGK
KPSSVLKVKVGNVSDFPNIDQAREVARQLVQTMIATKRNPNRIKRETEASELTISEVFAQYRNHLMGRSKPAKPNTLAVL
DKAENRLSEWAGLRVKDLTGNEILRKFDEIASRARTAAEQTFRWINVAVRHAIEIEAGNAQTQQRQPSLSYNPFSILKVQ
KKFRTRSELEDSYKAKGVRNPLSPKDTLGRFLTALHNKRSFNRLGCDYLLLTVLLGARKEETASLCWREVLTEEEARTTS
YVDLENRMIRFFDTKNRNDHELPICDATKRILEDRRDIVNDNEKRADKRKWVFPARSSRSKIGHYSDSKSLRENLCQEAG
IVKLGMHDLRRTFGRVAEELTSYAVVKKLLNHRNTTDPTERYANPDQDRVYEALQRIELNMLLTSPELYNSLLASSKYPP
ILKGKV

Sequences:

>Translated_486_residues
MKTTLSQAFIINKLSIGVKPTLNHAGKVVFEANPEHKPYIVFDDHRDSPVGFGVKVSLTKKTYVIQRRVSSGDRSVSEGK
KPSSVLKVKVGNVSDFPNIDQAREVARQLVQTMIATKRNPNRIKRETEASELTISEVFAQYRNHLMGRSKPAKPNTLAVL
DKAENRLSEWAGLRVKDLTGNEILRKFDEIASRARTAAEQTFRWINVAVRHAIEIEAGNAQTQQRQPSLSYNPFSILKVQ
KKFRTRSELEDSYKAKGVRNPLSPKDTLGRFLTALHNKRSFNRLGCDYLLLTVLLGARKEETASLCWREVLTEEEARTTS
YVDLENRMIRFFDTKNRNDHELPICDATKRILEDRRDIVNDNEKRADKRKWVFPARSSRSKIGHYSDSKSLRENLCQEAG
IVKLGMHDLRRTFGRVAEELTSYAVVKKLLNHRNTTDPTERYANPDQDRVYEALQRIELNMLLTSPELYNSLLASSKYPP
ILKGKV
>Mature_486_residues
MKTTLSQAFIINKLSIGVKPTLNHAGKVVFEANPEHKPYIVFDDHRDSPVGFGVKVSLTKKTYVIQRRVSSGDRSVSEGK
KPSSVLKVKVGNVSDFPNIDQAREVARQLVQTMIATKRNPNRIKRETEASELTISEVFAQYRNHLMGRSKPAKPNTLAVL
DKAENRLSEWAGLRVKDLTGNEILRKFDEIASRARTAAEQTFRWINVAVRHAIEIEAGNAQTQQRQPSLSYNPFSILKVQ
KKFRTRSELEDSYKAKGVRNPLSPKDTLGRFLTALHNKRSFNRLGCDYLLLTVLLGARKEETASLCWREVLTEEEARTTS
YVDLENRMIRFFDTKNRNDHELPICDATKRILEDRRDIVNDNEKRADKRKWVFPARSSRSKIGHYSDSKSLRENLCQEAG
IVKLGMHDLRRTFGRVAEELTSYAVVKKLLNHRNTTDPTERYANPDQDRVYEALQRIELNMLLTSPELYNSLLASSKYPP
ILKGKV

Specific function: Integrase Is Necessary For Integration Of The Phage Into The Host Genome By Site-Specific Recombination. In Conjunction With Excisionase, Integrase Is Also Necessary For Excision Of The Prophage From The Host Genome. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 55595; Mature: 55595

Theoretical pI: Translated: 10.42; Mature: 10.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTTLSQAFIINKLSIGVKPTLNHAGKVVFEANPEHKPYIVFDDHRDSPVGFGVKVSLTK
CCCCHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCEEEECCCCCCCCCCCEEEEECH
KTYVIQRRVSSGDRSVSEGKKPSSVLKVKVGNVSDFPNIDQAREVARQLVQTMIATKRNP
HHHHHHHHHCCCCCCHHCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCC
NRIKRETEASELTISEVFAQYRNHLMGRSKPAKPNTLAVLDKAENRLSEWAGLRVKDLTG
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEHHHHHHHHHHHHCCEEEECCH
NEILRKFDEIASRARTAAEQTFRWINVAVRHAIEIEAGNAQTQQRQPSLSYNPFSILKVQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHCCCCCCCCCHHHHHHH
KKFRTRSELEDSYKAKGVRNPLSPKDTLGRFLTALHNKRSFNRLGCDYLLLTVLLGARKE
HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCH
ETASLCWREVLTEEEARTTSYVDLENRMIRFFDTKNRNDHELPICDATKRILEDRRDIVN
HHHHHHHHHHHHHHHHHHHHEEEHHHHHEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHC
DNEKRADKRKWVFPARSSRSKIGHYSDSKSLRENLCQEAGIVKLGMHDLRRTFGRVAEEL
CCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEHCCHHHHHHHHHHHHHHH
TSYAVVKKLLNHRNTTDPTERYANPDQDRVYEALQRIELNMLLTSPELYNSLLASSKYPP
HHHHHHHHHHHCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHEECCHHHHHHHHHCCCCCC
ILKGKV
CCCCCC
>Mature Secondary Structure
MKTTLSQAFIINKLSIGVKPTLNHAGKVVFEANPEHKPYIVFDDHRDSPVGFGVKVSLTK
CCCCHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCEEEECCCCCCCCCCCEEEEECH
KTYVIQRRVSSGDRSVSEGKKPSSVLKVKVGNVSDFPNIDQAREVARQLVQTMIATKRNP
HHHHHHHHHCCCCCCHHCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCC
NRIKRETEASELTISEVFAQYRNHLMGRSKPAKPNTLAVLDKAENRLSEWAGLRVKDLTG
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEHHHHHHHHHHHHCCEEEECCH
NEILRKFDEIASRARTAAEQTFRWINVAVRHAIEIEAGNAQTQQRQPSLSYNPFSILKVQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHCCCCCCCCCHHHHHHH
KKFRTRSELEDSYKAKGVRNPLSPKDTLGRFLTALHNKRSFNRLGCDYLLLTVLLGARKE
HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCH
ETASLCWREVLTEEEARTTSYVDLENRMIRFFDTKNRNDHELPICDATKRILEDRRDIVN
HHHHHHHHHHHHHHHHHHHHEEEHHHHHEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHC
DNEKRADKRKWVFPARSSRSKIGHYSDSKSLRENLCQEAGIVKLGMHDLRRTFGRVAEEL
CCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEHCCHHHHHHHHHHHHHHH
TSYAVVKKLLNHRNTTDPTERYANPDQDRVYEALQRIELNMLLTSPELYNSLLASSKYPP
HHHHHHHHHHHCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHEECCHHHHHHHHHCCCCCC
ILKGKV
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA