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The map label for this gene is oppA [H]

Identifier: 156978252

GI number: 156978252

Start: 2133715

End: 2135394

Strand: Direct

Name: oppA [H]

Synonym: VIBHAR_07058

Alternate gene names: 156978252

Gene position: 2133715-2135394 (Clockwise)

Preceding gene: 156978250

Following gene: 156978254

Centisome position: 96.81

GC content: 47.62

Gene sequence:

>1680_bases
ATGATGAATAGTGGTACTTGCTTCAAAAGACGTGTTAGGAGAACGAAAAACGATATGGATTTTAAAAAGCATTCAACAGC
GTTGCTGGTTTCCTCTTTATTTACCCCATTTTTATCCGCTTCAGCTTTAGCTGATTCTTTGCCTGATGGTGTGCAACTCG
CACCGGAACAACATTTAGTACGAGCAAACGATGCAGAAGCGGCGACGCTAGACCCTGCAAAAGCCGAAGGCTTACCAGAG
ATGCACGTAATTCGTGATTTGTTTGAGGGATTAGTCATTCAAGACCGCGATGGCAATATCGTTCCTGGTGTTGCGGAATC
TTGGCAAACCGAAGACAACCAAACCTTTGTGTTCCAGCTGCGTAAAGACGCCAAATGGTCGAACGGCGATCCTGTGACAG
CGGATGATTTTGTTTATTCACTGCGTCGTGCAGTGGATCCGAAAACTGCTTCTCCCAATGTTTGGTATCTCAAACTCACT
AAGATCAAAAACATCGCTGACGTAGCAGAAGGTAAAAAGCCACTGGATGCTCTTGGTATCACCGCCGTCGATAAACATAC
TCTGCGCTTCGAACTTGATAGCAAAGTGCCGTACTTTGTCGCAATGACAGGCCACACCTCGATGATGCCTGTACACAAAG
CAACGGTTGAGAACAGCGAAAAGCCGTGGAGTGACCCACAGCAGTTTGTTGGTAACGGTGTATTTGTTCTGGATAAATGG
GTGGTGAATGAGCGCATTGAACTGAAAAAGAGCCCAAACTATTGGGATAGCGCGGATACTCATCTCACTGAAGTGACATA
CATTCCGTTTGAGAACCAAAACGCATCGATCAATCGCTATGCGGTGGGCGAAGTGGACATTACCTCAGATGTACCAACCC
ATATGGCGCAAAAGCTGAAGAAAGATTACGAGCAAGCGTATACCGCGGTTCCACTACTTTGTACATATTACTACGCGTTT
AACACCACGCGTCCTCCTTTCGATGATGAACGAGTTCGAAAAGCCGTGTCTTATTCGATGATGCGTGATGTGATCACGAA
TGGTGTCACACAAGTAGGTAATCTGCCTGCTTATACGTTCGCACACCAGTACACGGCTGGCTTTGATGCGACTCAGCCTG
AATACAGCACATGGACGCAGAAACAGCGTGATGAAAAGGCGCGTGAGCTGCTGAAAGAAGCAGGATACGGTGACGGTAAG
GCTCTGGATTTCAAATTGCTGTACAACACCAGTGAATCGAACAAAGCCATTGCAGTGGCGATTGCTTCTATGTTGAAGAA
CAACTTGGGCGCGAAAGTCGAATTAGAAAACCAAGAGTGGAAGTCTTACCTCGTCGCTCGTAAGCAAGGCGATTTCGATG
TGATGCGTGCCTCGTGGTGCGGAGATTACAACGAAGCTTCGACCTTCTTGAGTCTACTGCGCTCTGGTTCGTCAGGTAAC
TTTGCGCGTTACAGCAGTGAAGCCTACGATAAGGCGATGAATAGTGCATTGGCCGCAACGGATGAGAAAGCGCGCCAAGG
TTTCTATGATCAAGCCGAGCAACTGTTGGCGGCTGATATGCCAATCGCACCGATTTACTACTACATGCAAGCGCGTTTGG
TTCGCCCTACGGTTGGCGGTTTTGCCAAGAACAACGTAGAGGGTCGTATCTACTCGAAAGACCTCTACATCAAGAAGTAG

Upstream 100 bases:

>100_bases
CATCACTCAAGCTATATATAACTCATGTTACAGCCGTTGAACTTAGCATCTTGAGATTACTCGGATATAAACTGAACACT
TAAAGTTCGTCAATGCTTGT

Downstream 100 bases:

>100_bases
TGCTCAAAACAAGCGATAAATACGAAGCCCCGTAGGTGTGTCTTACGGGGCTTCTTTTTATTGTTAGCGAGTGGAGAGCT
TATTCACGAGCATAGCGACT

Product: hypothetical protein

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 559; Mature: 559

Protein sequence:

>559_residues
MMNSGTCFKRRVRRTKNDMDFKKHSTALLVSSLFTPFLSASALADSLPDGVQLAPEQHLVRANDAEAATLDPAKAEGLPE
MHVIRDLFEGLVIQDRDGNIVPGVAESWQTEDNQTFVFQLRKDAKWSNGDPVTADDFVYSLRRAVDPKTASPNVWYLKLT
KIKNIADVAEGKKPLDALGITAVDKHTLRFELDSKVPYFVAMTGHTSMMPVHKATVENSEKPWSDPQQFVGNGVFVLDKW
VVNERIELKKSPNYWDSADTHLTEVTYIPFENQNASINRYAVGEVDITSDVPTHMAQKLKKDYEQAYTAVPLLCTYYYAF
NTTRPPFDDERVRKAVSYSMMRDVITNGVTQVGNLPAYTFAHQYTAGFDATQPEYSTWTQKQRDEKARELLKEAGYGDGK
ALDFKLLYNTSESNKAIAVAIASMLKNNLGAKVELENQEWKSYLVARKQGDFDVMRASWCGDYNEASTFLSLLRSGSSGN
FARYSSEAYDKAMNSALAATDEKARQGFYDQAEQLLAADMPIAPIYYYMQARLVRPTVGGFAKNNVEGRIYSKDLYIKK

Sequences:

>Translated_559_residues
MMNSGTCFKRRVRRTKNDMDFKKHSTALLVSSLFTPFLSASALADSLPDGVQLAPEQHLVRANDAEAATLDPAKAEGLPE
MHVIRDLFEGLVIQDRDGNIVPGVAESWQTEDNQTFVFQLRKDAKWSNGDPVTADDFVYSLRRAVDPKTASPNVWYLKLT
KIKNIADVAEGKKPLDALGITAVDKHTLRFELDSKVPYFVAMTGHTSMMPVHKATVENSEKPWSDPQQFVGNGVFVLDKW
VVNERIELKKSPNYWDSADTHLTEVTYIPFENQNASINRYAVGEVDITSDVPTHMAQKLKKDYEQAYTAVPLLCTYYYAF
NTTRPPFDDERVRKAVSYSMMRDVITNGVTQVGNLPAYTFAHQYTAGFDATQPEYSTWTQKQRDEKARELLKEAGYGDGK
ALDFKLLYNTSESNKAIAVAIASMLKNNLGAKVELENQEWKSYLVARKQGDFDVMRASWCGDYNEASTFLSLLRSGSSGN
FARYSSEAYDKAMNSALAATDEKARQGFYDQAEQLLAADMPIAPIYYYMQARLVRPTVGGFAKNNVEGRIYSKDLYIKK
>Mature_559_residues
MMNSGTCFKRRVRRTKNDMDFKKHSTALLVSSLFTPFLSASALADSLPDGVQLAPEQHLVRANDAEAATLDPAKAEGLPE
MHVIRDLFEGLVIQDRDGNIVPGVAESWQTEDNQTFVFQLRKDAKWSNGDPVTADDFVYSLRRAVDPKTASPNVWYLKLT
KIKNIADVAEGKKPLDALGITAVDKHTLRFELDSKVPYFVAMTGHTSMMPVHKATVENSEKPWSDPQQFVGNGVFVLDKW
VVNERIELKKSPNYWDSADTHLTEVTYIPFENQNASINRYAVGEVDITSDVPTHMAQKLKKDYEQAYTAVPLLCTYYYAF
NTTRPPFDDERVRKAVSYSMMRDVITNGVTQVGNLPAYTFAHQYTAGFDATQPEYSTWTQKQRDEKARELLKEAGYGDGK
ALDFKLLYNTSESNKAIAVAIASMLKNNLGAKVELENQEWKSYLVARKQGDFDVMRASWCGDYNEASTFLSLLRSGSSGN
FARYSSEAYDKAMNSALAATDEKARQGFYDQAEQLLAADMPIAPIYYYMQARLVRPTVGGFAKNNVEGRIYSKDLYIKK

Specific function: This protein is a component of the oligopeptide permease, a binding protein-dependent transport system, it binds peptides up to five amino acids long with high affinity [H]

COG id: COG4166

COG function: function code E; ABC-type oligopeptide transport system, periplasmic component

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1787495, Length=535, Percent_Identity=47.6635514018692, Blast_Score=522, Evalue=1e-149,
Organism=Escherichia coli, GI87081878, Length=538, Percent_Identity=47.9553903345725, Blast_Score=503, Evalue=1e-143,
Organism=Escherichia coli, GI1789397, Length=524, Percent_Identity=39.5038167938931, Blast_Score=375, Evalue=1e-105,
Organism=Escherichia coli, GI1787762, Length=545, Percent_Identity=24.5871559633028, Blast_Score=120, Evalue=2e-28,
Organism=Escherichia coli, GI1787052, Length=523, Percent_Identity=23.5181644359465, Blast_Score=115, Evalue=1e-26,
Organism=Escherichia coli, GI1789966, Length=470, Percent_Identity=24.6808510638298, Blast_Score=113, Evalue=3e-26,
Organism=Escherichia coli, GI1787551, Length=479, Percent_Identity=22.1294363256785, Blast_Score=95, Evalue=1e-20,
Organism=Escherichia coli, GI1789887, Length=479, Percent_Identity=22.7557411273486, Blast_Score=87, Evalue=2e-18,

Paralogues:

None

Copy number: 760 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 380 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 500 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 2360 Molecules/Cell In: Stationary-Phase,

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 62864; Mature: 62864

Theoretical pI: Translated: 6.45; Mature: 6.45

Prosite motif: PS01040 SBP_BACTERIAL_5

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMNSGTCFKRRVRRTKNDMDFKKHSTALLVSSLFTPFLSASALADSLPDGVQLAPEQHLV
CCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCHHHEE
RANDAEAATLDPAKAEGLPEMHVIRDLFEGLVIQDRDGNIVPGVAESWQTEDNQTFVFQL
ECCCCCCCCCCCHHHCCCCHHHHHHHHHCCCEEECCCCCCCCCCHHCCCCCCCCEEEEEE
RKDAKWSNGDPVTADDFVYSLRRAVDPKTASPNVWYLKLTKIKNIADVAEGKKPLDALGI
ECCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEEECHHHHHHHHCCCCCHHHHCC
TAVDKHTLRFELDSKVPYFVAMTGHTSMMPVHKATVENSEKPWSDPQQFVGNGVFVLDKW
EEECCEEEEEEECCCCCEEEEECCCCCCCCHHHHHHCCCCCCCCCHHHHHCCCEEEEEHH
VVNERIELKKSPNYWDSADTHLTEVTYIPFENQNASINRYAVGEVDITSDVPTHMAQKLK
HHCCHHEECCCCCCCCCCCCCEEEEEEEEECCCCCCCCEEEECCEEECCCCHHHHHHHHH
KDYEQAYTAVPLLCTYYYAFNTTRPPFDDERVRKAVSYSMMRDVITNGVTQVGNLPAYTF
HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
AHQYTAGFDATQPEYSTWTQKQRDEKARELLKEAGYGDGKALDFKLLYNTSESNKAIAVA
HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCHHHH
IASMLKNNLGAKVELENQEWKSYLVARKQGDFDVMRASWCGDYNEASTFLSLLRSGSSGN
HHHHHHHCCCCEEEECCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCCC
FARYSSEAYDKAMNSALAATDEKARQGFYDQAEQLLAADMPIAPIYYYMQARLVRPTVGG
CHHCCHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCC
FAKNNVEGRIYSKDLYIKK
CCCCCCCCEEEECCEEEEC
>Mature Secondary Structure
MMNSGTCFKRRVRRTKNDMDFKKHSTALLVSSLFTPFLSASALADSLPDGVQLAPEQHLV
CCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCHHHEE
RANDAEAATLDPAKAEGLPEMHVIRDLFEGLVIQDRDGNIVPGVAESWQTEDNQTFVFQL
ECCCCCCCCCCCHHHCCCCHHHHHHHHHCCCEEECCCCCCCCCCHHCCCCCCCCEEEEEE
RKDAKWSNGDPVTADDFVYSLRRAVDPKTASPNVWYLKLTKIKNIADVAEGKKPLDALGI
ECCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEEECHHHHHHHHCCCCCHHHHCC
TAVDKHTLRFELDSKVPYFVAMTGHTSMMPVHKATVENSEKPWSDPQQFVGNGVFVLDKW
EEECCEEEEEEECCCCCEEEEECCCCCCCCHHHHHHCCCCCCCCCHHHHHCCCEEEEEHH
VVNERIELKKSPNYWDSADTHLTEVTYIPFENQNASINRYAVGEVDITSDVPTHMAQKLK
HHCCHHEECCCCCCCCCCCCCEEEEEEEEECCCCCCCCEEEECCEEECCCCHHHHHHHHH
KDYEQAYTAVPLLCTYYYAFNTTRPPFDDERVRKAVSYSMMRDVITNGVTQVGNLPAYTF
HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
AHQYTAGFDATQPEYSTWTQKQRDEKARELLKEAGYGDGKALDFKLLYNTSESNKAIAVA
HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCHHHH
IASMLKNNLGAKVELENQEWKSYLVARKQGDFDVMRASWCGDYNEASTFLSLLRSGSSGN
HHHHHHHCCCCEEEECCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCCC
FARYSSEAYDKAMNSALAATDEKARQGFYDQAEQLLAADMPIAPIYYYMQARLVRPTVGG
CHHCCHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCC
FAKNNVEGRIYSKDLYIKK
CCCCCCCCEEEECCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2187863; 9097039; 9278503; 2015910; 9298646; 9600841 [H]