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The map label for this gene is 156978209

Identifier: 156978209

GI number: 156978209

Start: 2092594

End: 2093121

Strand: Direct

Name: 156978209

Synonym: VIBHAR_07014

Alternate gene names: NA

Gene position: 2092594-2093121 (Clockwise)

Preceding gene: 156978208

Following gene: 156978214

Centisome position: 94.94

GC content: 49.62

Gene sequence:

>528_bases
ATGACAGCACAGTCAACGGTCATTCTTGGACTGTATAACCCTAAAGATCCAACCAATGTGGGCGCGGTGATGCGCGCAGC
AGGGTGTTATGACGCCACGCAAGTTCGTTATAACGGCACTCGCTATAATCGTGCGGCAAAATTCCGAACCGACACCAAGA
ACATGCACGAACGTATCGATTTGGTCGAAATGGACGATCTCACTGCTCATCTTGCTGAAGACGTGAAAGTGGTGTGTGTT
GAGTTGGCCGTCGGCGCTACAGCGTTGCCTCTTTTTGCACACCCAGAAAACGCGGTGTATATCTTTGGCCCTGAAGATGG
CTCACTTCCGCAAGAGGTTGTCGATAAGGCCGATCACGTGGTGTATGTACCCACCAATGGCTGCATGAACTTGGCGGCAA
CAGTCAATGTTGTCTTGTATGATCGTTTGGCGAAAAACCTTGGCACGATTGACGACCATCAACAAGTGATGGCTAACCGA
GACAACAAGAATCGATTGAAGGTCAAAGACTGCGTAACAGCGCAATAA

Upstream 100 bases:

>100_bases
AAAAAATATTGTGATAGTACTTCTGGCGGGTTAAGTCCATAATCCCACGCTCAACGAGCATCGAGCTCTTATCCTAAAAC
CATTAAGTAGAACAACAGCA

Downstream 100 bases:

>100_bases
TTTAGATTCGGTACTGCTGAATAAAAAAAGAGCCTATATCGAAATATAGGCTCAAAGCAGTGAAAAAGTGTGCGTGATTT
TTGATTAATATTTTGGTTAT

Product: 23S rRNA methyltransferase

Products: NA

Alternate protein names: RNA Methyltransferase; 23S RRNA Methyltransferase; RNA Methyltransferase TrmH Family; Cold-Shock RNA Methyltransferase; rRNA Methylase; TrmH Family RNA Methyltransferase; TRNA/RRNA MethyltransferaU; rRNA Methyltransferase; SpoU RRNA Methylase Family Protein; rRNA Methylase-Family Protein; SpoU Class RRNA Methylase

Number of amino acids: Translated: 175; Mature: 174

Protein sequence:

>175_residues
MTAQSTVILGLYNPKDPTNVGAVMRAAGCYDATQVRYNGTRYNRAAKFRTDTKNMHERIDLVEMDDLTAHLAEDVKVVCV
ELAVGATALPLFAHPENAVYIFGPEDGSLPQEVVDKADHVVYVPTNGCMNLAATVNVVLYDRLAKNLGTIDDHQQVMANR
DNKNRLKVKDCVTAQ

Sequences:

>Translated_175_residues
MTAQSTVILGLYNPKDPTNVGAVMRAAGCYDATQVRYNGTRYNRAAKFRTDTKNMHERIDLVEMDDLTAHLAEDVKVVCV
ELAVGATALPLFAHPENAVYIFGPEDGSLPQEVVDKADHVVYVPTNGCMNLAATVNVVLYDRLAKNLGTIDDHQQVMANR
DNKNRLKVKDCVTAQ
>Mature_174_residues
TAQSTVILGLYNPKDPTNVGAVMRAAGCYDATQVRYNGTRYNRAAKFRTDTKNMHERIDLVEMDDLTAHLAEDVKVVCVE
LAVGATALPLFAHPENAVYIFGPEDGSLPQEVVDKADHVVYVPTNGCMNLAATVNVVLYDRLAKNLGTIDDHQQVMANRD
NKNRLKVKDCVTAQ

Specific function: Unknown

COG id: COG0219

COG function: function code J; Predicted rRNA methylase (SpoU class)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19250; Mature: 19119

Theoretical pI: Translated: 6.00; Mature: 6.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAQSTVILGLYNPKDPTNVGAVMRAAGCYDATQVRYNGTRYNRAAKFRTDTKNMHERID
CCCCCEEEEEEECCCCCCHHHHHHHHCCCCCCEEEEECCCEECCEEEECCCHHHHHHHCC
LVEMDDLTAHLAEDVKVVCVELAVGATALPLFAHPENAVYIFGPEDGSLPQEVVDKADHV
EEEHHHHHHHHHHHHHEEEEEHHCCCEECEEEECCCCEEEEECCCCCCCHHHHHCCCCCE
VYVPTNGCMNLAATVNVVLYDRLAKNLGTIDDHQQVMANRDNKNRLKVKDCVTAQ
EEECCCCCEEHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCEEECCCCCCC
>Mature Secondary Structure 
TAQSTVILGLYNPKDPTNVGAVMRAAGCYDATQVRYNGTRYNRAAKFRTDTKNMHERID
CCCCEEEEEEECCCCCCHHHHHHHHCCCCCCEEEEECCCEECCEEEECCCHHHHHHHCC
LVEMDDLTAHLAEDVKVVCVELAVGATALPLFAHPENAVYIFGPEDGSLPQEVVDKADHV
EEEHHHHHHHHHHHHHEEEEEHHCCCEECEEEECCCCEEEEECCCCCCCHHHHHCCCCCE
VYVPTNGCMNLAATVNVVLYDRLAKNLGTIDDHQQVMANRDNKNRLKVKDCVTAQ
EEECCCCCEEHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA