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The map label for this gene is hdfR [H]

Identifier: 156978194

GI number: 156978194

Start: 2079875

End: 2080768

Strand: Reverse

Name: hdfR [H]

Synonym: VIBHAR_06999

Alternate gene names: 156978194

Gene position: 2080768-2079875 (Counterclockwise)

Preceding gene: 156978196

Following gene: 156978191

Centisome position: 94.41

GC content: 47.87

Gene sequence:

>894_bases
ATGGATGTAAAGGTTTTTAGAACATTTTTAGAGCTGGCAAAGGTTCGTCACTTCGGACGAGCTGCTGAGAACTTGTACAT
TACTCAAGCCGCTGTGAGCGCACGCATCAAACAACTCGAAAGTTATTTCGATACGCAGTTGTTTATTCGTGATCGAAATA
ACATAAAGTTGACCTCCGCAGGTGAGCGTTTAATAAGCTATGCCGAGGTGATGGTGACCACCTTGCAGCAAGCCAAACTC
GAATTATCCCTTGAAGATGGCAAGGCGTTGCAGCTCACCATGGGTGGTACGCCGAACATTTGGGATGCTTATCTGCAAAA
CTGTTTGAGTGTGGTAACAGATTCATTTGGTGGTTACGGCTTTATGGCAGAAGTCATGGGGCGTGAGATGCTAAGCCGCA
GCCTGCTTGAGCGCACTCTCGATATGGCATTCGCCTTCGATCAAATCAAAGCTGATGAGCTCAATTGCAAGAAAGTCGCT
GACGTTGTGTTGGTGTTGGTGTCTACCGAGCAATATTCTCTTGATACGGTCTTTGATAAGAAATACGTGTATGTGGATTG
GGGCACGCGCTTCGCTTCTGAGCACGCAGAACGTCATCCAAAAATCCCAGCGCCTTACCTTCGCACTTCTACCGCTCGTA
TCGCGCTAGACTTCGTTTTAGAGAAAGGCGGCAGCGCATACCTACCAGCCTCTCTGGTAGAGCCGTTTATTGCAAGCGGG
CAGCTCCACAAGGTGTCTGGTGTAGAAGATTGGTACCGTCCTATCTATTTGAGCTATCGTAAAGCCAGCACGTCTGTAGA
CGCGATTAAGCAGGTTGAAGAAATTGTAAAAGAGATTGACCCGTTAACGGCGTACAGTTTGCAGCAAATTGCGGACATTC
CAGCAGGCGAGTAA

Upstream 100 bases:

>100_bases
AAAATTAGGCGCAAAGCTAACAAAAGAAAAACAAAACTTTTTTGTCGTCAAGATTTTAATTAATTGTTAATCTGGTTTTA
TATTAACCAGGAGATGGTTT

Downstream 100 bases:

>100_bases
TTTCTGCTTTTGCGATCCAGCGCAAAATTAGACGAAACCCCCTTGGTGTGATGCCAAGGGGGTTTTTGTGGTGCGCCGAG
CATGGCGTTGATCTAGGAGG

Product: transcriptional regulator

Products: NA

Alternate protein names: H-NS-dependent flhDC regulator [H]

Number of amino acids: Translated: 297; Mature: 297

Protein sequence:

>297_residues
MDVKVFRTFLELAKVRHFGRAAENLYITQAAVSARIKQLESYFDTQLFIRDRNNIKLTSAGERLISYAEVMVTTLQQAKL
ELSLEDGKALQLTMGGTPNIWDAYLQNCLSVVTDSFGGYGFMAEVMGREMLSRSLLERTLDMAFAFDQIKADELNCKKVA
DVVLVLVSTEQYSLDTVFDKKYVYVDWGTRFASEHAERHPKIPAPYLRTSTARIALDFVLEKGGSAYLPASLVEPFIASG
QLHKVSGVEDWYRPIYLSYRKASTSVDAIKQVEEIVKEIDPLTAYSLQQIADIPAGE

Sequences:

>Translated_297_residues
MDVKVFRTFLELAKVRHFGRAAENLYITQAAVSARIKQLESYFDTQLFIRDRNNIKLTSAGERLISYAEVMVTTLQQAKL
ELSLEDGKALQLTMGGTPNIWDAYLQNCLSVVTDSFGGYGFMAEVMGREMLSRSLLERTLDMAFAFDQIKADELNCKKVA
DVVLVLVSTEQYSLDTVFDKKYVYVDWGTRFASEHAERHPKIPAPYLRTSTARIALDFVLEKGGSAYLPASLVEPFIASG
QLHKVSGVEDWYRPIYLSYRKASTSVDAIKQVEEIVKEIDPLTAYSLQQIADIPAGE
>Mature_297_residues
MDVKVFRTFLELAKVRHFGRAAENLYITQAAVSARIKQLESYFDTQLFIRDRNNIKLTSAGERLISYAEVMVTTLQQAKL
ELSLEDGKALQLTMGGTPNIWDAYLQNCLSVVTDSFGGYGFMAEVMGREMLSRSLLERTLDMAFAFDQIKADELNCKKVA
DVVLVLVSTEQYSLDTVFDKKYVYVDWGTRFASEHAERHPKIPAPYLRTSTARIALDFVLEKGGSAYLPASLVEPFIASG
QLHKVSGVEDWYRPIYLSYRKASTSVDAIKQVEEIVKEIDPLTAYSLQQIADIPAGE

Specific function: Negatively regulates the transcription of the flagellar master operon flhDC by binding to the upstream region of the operon [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI48994962, Length=278, Percent_Identity=33.4532374100719, Blast_Score=153, Evalue=1e-38,
Organism=Escherichia coli, GI1790208, Length=68, Percent_Identity=41.1764705882353, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI157672245, Length=239, Percent_Identity=25.5230125523013, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020890
- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33409; Mature: 33409

Theoretical pI: Translated: 5.24; Mature: 5.24

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDVKVFRTFLELAKVRHFGRAAENLYITQAAVSARIKQLESYFDTQLFIRDRNNIKLTSA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCEEEECH
GERLISYAEVMVTTLQQAKLELSLEDGKALQLTMGGTPNIWDAYLQNCLSVVTDSFGGYG
HHHHHHHHHHHHHHHHHHHEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCHH
FMAEVMGREMLSRSLLERTLDMAFAFDQIKADELNCKKVADVVLVLVSTEQYSLDTVFDK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHEECCCCCCHHHEECC
KYVYVDWGTRFASEHAERHPKIPAPYLRTSTARIALDFVLEKGGSAYLPASLVEPFIASG
EEEEEECCHHHHHHHHHHCCCCCCCHHHCCHHHHHHHHHHHCCCCCCCCHHHHHHHHCCC
QLHKVSGVEDWYRPIYLSYRKASTSVDAIKQVEEIVKEIDPLTAYSLQQIADIPAGE
CCEECCCHHHHHHHHHEEHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MDVKVFRTFLELAKVRHFGRAAENLYITQAAVSARIKQLESYFDTQLFIRDRNNIKLTSA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCEEEECH
GERLISYAEVMVTTLQQAKLELSLEDGKALQLTMGGTPNIWDAYLQNCLSVVTDSFGGYG
HHHHHHHHHHHHHHHHHHHEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCHH
FMAEVMGREMLSRSLLERTLDMAFAFDQIKADELNCKKVADVVLVLVSTEQYSLDTVFDK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHEECCCCCCHHHEECC
KYVYVDWGTRFASEHAERHPKIPAPYLRTSTARIALDFVLEKGGSAYLPASLVEPFIASG
EEEEEECCHHHHHHHHHHCCCCCCCHHHCCHHHHHHHHHHHCCCCCCCCHHHHHHHHCCC
QLHKVSGVEDWYRPIYLSYRKASTSVDAIKQVEEIVKEIDPLTAYSLQQIADIPAGE
CCEECCCHHHHHHHHHEEHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA