Definition Vibrio harveyi ATCC BAA-1116 chromosome II, complete sequence.
Accession NC_009784
Length 2,204,018

Click here to switch to the map view.

The map label for this gene is 156978125

Identifier: 156978125

GI number: 156978125

Start: 2024340

End: 2024852

Strand: Direct

Name: 156978125

Synonym: VIBHAR_06930

Alternate gene names: NA

Gene position: 2024340-2024852 (Clockwise)

Preceding gene: 156978124

Following gene: 156978126

Centisome position: 91.85

GC content: 42.11

Gene sequence:

>513_bases
ATGACGCGATCTTGCCGAAACAAGGGCAATAACTTCAAAGGGCACAAGATGAGAAAAACAGTAGTACTCGCTTTACTTTT
GTTTGCACCCATACTTTTTGCAAACACGATACAGTTTAGCAGTTTAGAAAAATCCAATATCGTTGTGGCACTGTCAGACC
TTGAGTCGATGCCTCAAACCACTTATACCACCGCTCTGCCTTGGCTTGAAAAGCCCGCCGAGTTTAATGGCGTAAAACTC
AGTACACTTTTACAGCACACACTCGGTGAAGTTCCTCAGCACGTCCAAGTAAGGGCAATGAATGATTACTATTCCTATAT
TTCACGTGAAGACATCCTTCGTTACCAACCTATCATTGCGTATAAACAAGACCATAATTACATCAAGGTTCGCAATAAGG
GACCATATTGGCTGATCTACCCAGTCACAAAATACCCAGAGCTTGATGTCAGTTACTACCACTCCCAAATGGTTTGGCAA
ATCAATAGGATCAGTACGAAAGAAGAAGAATGA

Upstream 100 bases:

>100_bases
CCACCAACGGTTACTTTTCACCCATAACGTATTATATAAATTCATCAAGTTGGCTCTATTATTAATAACTATATAACCGA
GATTTCAGCAGATCGATTCT

Downstream 100 bases:

>100_bases
AAGTACAACCCAACGTTCCCAAGCAGGGACCTTTTTCATCCCGAAGCAAAACCTTACTTCTGATTTTTGCTTCCACACTG
CTGGTCGCCAATATCGTGCT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 170; Mature: 169

Protein sequence:

>170_residues
MTRSCRNKGNNFKGHKMRKTVVLALLLFAPILFANTIQFSSLEKSNIVVALSDLESMPQTTYTTALPWLEKPAEFNGVKL
STLLQHTLGEVPQHVQVRAMNDYYSYISREDILRYQPIIAYKQDHNYIKVRNKGPYWLIYPVTKYPELDVSYYHSQMVWQ
INRISTKEEE

Sequences:

>Translated_170_residues
MTRSCRNKGNNFKGHKMRKTVVLALLLFAPILFANTIQFSSLEKSNIVVALSDLESMPQTTYTTALPWLEKPAEFNGVKL
STLLQHTLGEVPQHVQVRAMNDYYSYISREDILRYQPIIAYKQDHNYIKVRNKGPYWLIYPVTKYPELDVSYYHSQMVWQ
INRISTKEEE
>Mature_169_residues
TRSCRNKGNNFKGHKMRKTVVLALLLFAPILFANTIQFSSLEKSNIVVALSDLESMPQTTYTTALPWLEKPAEFNGVKLS
TLLQHTLGEVPQHVQVRAMNDYYSYISREDILRYQPIIAYKQDHNYIKVRNKGPYWLIYPVTKYPELDVSYYHSQMVWQI
NRISTKEEE

Specific function: Unknown

COG id: COG3915

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19907; Mature: 19776

Theoretical pI: Translated: 9.54; Mature: 9.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRSCRNKGNNFKGHKMRKTVVLALLLFAPILFANTIQFSSLEKSNIVVALSDLESMPQT
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCHHHCCCC
TYTTALPWLEKPAEFNGVKLSTLLQHTLGEVPQHVQVRAMNDYYSYISREDILRYQPIIA
HHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEHHHHHHHHCHHHHHHHCCEEE
YKQDHNYIKVRNKGPYWLIYPVTKYPELDVSYYHSQMVWQINRISTKEEE
EECCCCEEEEECCCCEEEEEECCCCCCCCHHHHHHHHEEEEECCCCCCCC
>Mature Secondary Structure 
TRSCRNKGNNFKGHKMRKTVVLALLLFAPILFANTIQFSSLEKSNIVVALSDLESMPQT
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCHHHCCCC
TYTTALPWLEKPAEFNGVKLSTLLQHTLGEVPQHVQVRAMNDYYSYISREDILRYQPIIA
HHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEHHHHHHHHCHHHHHHHCCEEE
YKQDHNYIKVRNKGPYWLIYPVTKYPELDVSYYHSQMVWQINRISTKEEE
EECCCCEEEEECCCCEEEEEECCCCCCCCHHHHHHHHEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA