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The map label for this gene is ompW [H]

Identifier: 156978100

GI number: 156978100

Start: 2003354

End: 2003995

Strand: Reverse

Name: ompW [H]

Synonym: VIBHAR_06904

Alternate gene names: 156978100

Gene position: 2003995-2003354 (Counterclockwise)

Preceding gene: 156978104

Following gene: 156978099

Centisome position: 90.92

GC content: 45.02

Gene sequence:

>642_bases
ATGAAAAAAACAATCAGCAGTTTAGCAGTGGTTGCCGCGTTAGTGTCTCCAAGTGTTTTCGCTCACAGTGAAGGTGACTT
TATTCTACGTGTTGGTGCGGCATCGGTTGTACCAAACGACAGCAGTGACAAGATCTTGGGTTCTCAATATGAGTTAGAAG
TTAATTCAGACACCCAGCTGGGTTTGACGTTTGGTTACATGTTTACCGACAACATCAGCTTAGAGGTTCTAGCTGCGACA
CCATTTAGCCACGATATCTCTACTGATTTGGTTGGCAAGGATATCGGTAGCACCAAACACTTGCCACCTACAGTAATGGT
TCAATACTATTTTGGTGACTCACAAAGCAAATTCCGCCCGTACGTGGGTGCGGGTCTGAACTACACCATCTTCTTCGATG
AAGGCTTTAACAGTACAGGTAAAGGTGCGGGACTTTCTGATCTGAAATTGGATGATTCATTCGGTCTAGCTGCCAACGTT
GGTTTGGACTACATGATCAACGATAAATGGTTCCTAAACGCATCGGCGTGGTATGCAAACATTGAAACAGAAGCGACCTA
CAAAGCGGGTGGCGCGAAACAAAAAACTGACGTTGAAATCAACCCTTGGGTATTCATGATCAGCGGCGGTTACAAGTTCT
AA

Upstream 100 bases:

>100_bases
TTCACAAATTGATTTCCATCAAAATAGTAGGGTTTCTATGTGCTAGATTGCGCGCAGCTCAAGAATAGAAGAACTATTAA
GCCCTACAAAGGAAATAACA

Downstream 100 bases:

>100_bases
GTAAAAGCAGTAGTAAAAGAACAATAAGATTATTGGCATGACTTTTAGGGGCAGTTGCGGGGATTGCCCCTCTTTTTTTG
TCTGTTATTACTGAACCATT

Product: outer membrane protein W

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 213; Mature: 213

Protein sequence:

>213_residues
MKKTISSLAVVAALVSPSVFAHSEGDFILRVGAASVVPNDSSDKILGSQYELEVNSDTQLGLTFGYMFTDNISLEVLAAT
PFSHDISTDLVGKDIGSTKHLPPTVMVQYYFGDSQSKFRPYVGAGLNYTIFFDEGFNSTGKGAGLSDLKLDDSFGLAANV
GLDYMINDKWFLNASAWYANIETEATYKAGGAKQKTDVEINPWVFMISGGYKF

Sequences:

>Translated_213_residues
MKKTISSLAVVAALVSPSVFAHSEGDFILRVGAASVVPNDSSDKILGSQYELEVNSDTQLGLTFGYMFTDNISLEVLAAT
PFSHDISTDLVGKDIGSTKHLPPTVMVQYYFGDSQSKFRPYVGAGLNYTIFFDEGFNSTGKGAGLSDLKLDDSFGLAANV
GLDYMINDKWFLNASAWYANIETEATYKAGGAKQKTDVEINPWVFMISGGYKF
>Mature_213_residues
MKKTISSLAVVAALVSPSVFAHSEGDFILRVGAASVVPNDSSDKILGSQYELEVNSDTQLGLTFGYMFTDNISLEVLAAT
PFSHDISTDLVGKDIGSTKHLPPTVMVQYYFGDSQSKFRPYVGAGLNYTIFFDEGFNSTGKGAGLSDLKLDDSFGLAANV
GLDYMINDKWFLNASAWYANIETEATYKAGGAKQKTDVEINPWVFMISGGYKF

Specific function: Acts As A Receptor For Colicin S4. [C]

COG id: COG3047

COG function: function code M; Outer membrane protein W

Gene ontology:

Cell location: Cell outer membrane [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the OmpW/AlkL family [H]

Homologues:

Organism=Escherichia coli, GI1787510, Length=214, Percent_Identity=57.4766355140187, Blast_Score=250, Evalue=5e-68,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR005618 [H]

Pfam domain/function: PF03922 OmpW [H]

EC number: NA

Molecular weight: Translated: 23082; Mature: 23082

Theoretical pI: Translated: 4.46; Mature: 4.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKTISSLAVVAALVSPSVFAHSEGDFILRVGAASVVPNDSSDKILGSQYELEVNSDTQL
CCCHHHHHHHHHHHHCCCEEEECCCCEEEEECCEEECCCCCCCCEECCEEEEEECCCCEE
GLTFGYMFTDNISLEVLAATPFSHDISTDLVGKDIGSTKHLPPTVMVQYYFGDSQSKFRP
EEEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCC
YVGAGLNYTIFFDEGFNSTGKGAGLSDLKLDDSFGLAANVGLDYMINDKWFLNASAWYAN
EECCCCEEEEEEECCCCCCCCCCCCCCEEECCCCCEEEECCEEEEECCEEEEECCEEEEE
IETEATYKAGGAKQKTDVEINPWVFMISGGYKF
ECCCEEEECCCCCCCCCEEECCEEEEEECCCCC
>Mature Secondary Structure
MKKTISSLAVVAALVSPSVFAHSEGDFILRVGAASVVPNDSSDKILGSQYELEVNSDTQL
CCCHHHHHHHHHHHHCCCEEEECCCCEEEEECCEEECCCCCCCCEECCEEEEEECCCCEE
GLTFGYMFTDNISLEVLAATPFSHDISTDLVGKDIGSTKHLPPTVMVQYYFGDSQSKFRP
EEEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCC
YVGAGLNYTIFFDEGFNSTGKGAGLSDLKLDDSFGLAANVGLDYMINDKWFLNASAWYAN
EECCCCEEEEEEECCCCCCCCCCCCCCEEECCCCCEEEECCEEEEECCEEEEECCEEEEE
IETEATYKAGGAKQKTDVEINPWVFMISGGYKF
ECCCEEEECCCCCCCCCEEECCEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2336399; 10952301 [H]